RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA807836" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA807836 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29485489 29485489 PRJNA807836_S_NODE_25950_length_260_cov_0.887701_g25674_i0 PRJNA807836 25950 260 0.887701 2.3080226 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.9 0.0171   NR KAA3605686.1 2026780 g25674 i0 36.8 0.657692307692308 57 34 65.8 1 191 21 44 98 KAA3605686.1 MAG: fatty acid desaturase [Planctomycetota bacterium] diamond 171 43.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30054031 30054031 PRJNA807836_S_NODE_20631_length_300_cov_1.303965_g20355_i0 PRJNA807836 20631 300 1.303965 3.911895 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.1 0.0492   NR MBI5865519.1 2026780 g20355 i0 45.9 0.37 37 20 37 0 19 129 81 117 MBI5865519.1 DMT family transporter [Planctomycetota bacterium] diamond 111 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;