RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA807685", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA807685 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19074523 19074523 PRJNA807685_P_NODE_63535_length_154_cov_1.974359_g62462_i0 PRJNA807685 63535 154 1.974359 3.04051286 Helicobacter 209 Bacteria Bacteria 52.8 0.013   NTclustered gi|2641523656|gb|CP078990.1| 210 g62462 i0 100 6.18181818181818 28 0 18 0 6 33 507480 507507 Helicobacter pylori strain HpGP-COG-004 chromosome, complete genome blastn 952 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
22483581 22483581 PRJNA807685_P_NODE_58658_length_160_cov_1.268293_g57585_i0 PRJNA807685 58658 160 1.268293 2.0292688 Aliarcobacter cibarius 255507 Bacteria Bacteria 54.7 0.004   NTclustered gi|1755823616|gb|CP043857.1| 255507 g57585 i0 100 0.18125 29 0 18 0 129 157 1799789 1799817 Aliarcobacter cibarius strain H743 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cibarius
27623041 27623041 PRJNA807685_P_NODE_55244_length_164_cov_2.078740_g54171_i0 PRJNA807685 55244 164 2.07874 3.4091336 Helicobacter pylori 210 Bacteria Bacteria 42.4 0.00388   NR GAA6796434.1 210 g54171 i0 90 0.365853658536585 20 2 36.6 0 61 2 1 20 GAA6796434.1 hypothetical protein Kyoto200A_0900 [Helicobacter pylori] diamond 60 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30189361 30189361 PRJNA807685_P_NODE_60092_length_158_cov_1.719008_g59019_i0 PRJNA807685 60092 158 1.719008 2.71603264 Bacteria 2 Bacteria Bacteria 40 0.0222   NR GAA6820949.1 210 g59019 i0 60.9 0.930379746835443 23 9 43.7 0 85 17 1 23 GAA6820949.1 hypothetical protein Kyoto200A_3790 [Helicobacter pylori] diamond 147 40 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30907460 30907460 PRJNA807685_P_NODE_42074_length_189_cov_1.473684_g41001_i0 PRJNA807685 42074 189 1.473684 2.78526276 Helicobacter pylori 210 Bacteria Bacteria 43.9 0.00727   NR GAA9002713.1 210 g41001 i0 41.9 1.36507936507937 43 25 68.3 0 150 22 90 132 GAA9002713.1 hypothetical protein HpHA116_03920 [Helicobacter pylori] diamond 258 43.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32866800 32866800 PRJNA807685_P_NODE_49000_length_174_cov_2.262774_g47927_i0 PRJNA807685 49000 174 2.262774 3.93722676 Campylobacterota bacterium 2026809 Bacteria Bacteria 42 0.0284   NR NPA11277.1 2026809 g47927 i0 52.9 0.586206896551724 34 16 58.6 0 168 67 52 85 NPA11277.1 (Fe-S)-binding protein [Campylobacterota bacterium] diamond 102 42 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;