RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA807685", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA807685 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13560309 13560309 PRJNA807685_P_NODE_53171_length_167_cov_2.307692_g52098_i0 PRJNA807685 53171 167 2.307692 3.85384564 Colpoda cucullus 63137 SAR_Eukaryotes SAR_Eukaryotes 219 1.3099999999999999e-52   NTclustered gi|358350409|dbj|AB684382.1| 63137 g52098 i0 93.333 90.1736526946108 150 7 88 3 1 147 325 176 Colpoda cucullus gene for 18S rRNA, partial sequence blastn 15059 219 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda cucullus
22483588 22483588 PRJNA807685_P_NODE_59298_length_159_cov_1.639344_g58225_i0 PRJNA807685 59298 159 1.639344 2.60655696 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 87.9 3.61e-13   NTclustered gi|471236634|ref|XM_004040082.1| 5932 g58225 i0 82.653 1.75471698113208 98 17 62 0 14 111 500 597 Ichthyophthirius multifiliis hypothetical protein (IMG5_000530) mRNA, complete cds blastn 279 87.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;