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contig_metadata

18 rows where bioproject = "PRJNA807685", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 18 ✖

bioproject 1

  • PRJNA807685 · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3774546 3774546 PRJNA807685_P_NODE_24563_length_269_cov_8.504310_g23490_i0 PRJNA807685 24563 269 8.50431 22.8765939 Caenorhabditis 6237 Nematoda Nematoda 353 6.03e-93   NTclustered gi|413006566|emb|Z92784.2| 6239 g23490 i0 100 68.7360594795539 191 0 71 0 44 234 28933 28743 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 18490 353 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6326757 6326757 PRJNA807685_P_NODE_31425_length_226_cov_10.407407_g30352_i0 PRJNA807685 31425 226 10.407407 23.52073982 Chromadorea 119089 Nematoda Nematoda 342 1.07e-89   NTclustered gi|25167357|ref|NR_000053.1| 6239 g30352 i0 100 82.0442477876106 185 0 82 0 25 209 1589 1405 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 18542 342 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6326832 6326832 PRJNA807685_P_NODE_51805_length_169_cov_4.303030_g50732_i0 PRJNA807685 51805 169 4.30303 7.2721207 Caenorhabditis 6237 Nematoda Nematoda 307 2.73e-79   NTclustered gi|356605872|gb|JN636061.1| 6238 g50732 i0 100 89.8757396449704 166 0 98 0 1 166 6075 6240 Caenorhabditis briggsae 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15189 307 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
7184780 7184780 PRJNA807685_P_NODE_28506_length_242_cov_62.765854_g27433_i0 PRJNA807685 28506 242 62.765854 151.89336668 Caenorhabditis elegans 6239 Nematoda Nematoda 285 1.97e-72   NTclustered gi|1279388955|gb|MG551716.1| 6239 g27433 i0 100 64.3884297520661 154 0 64 0 34 187 498 651 Caenorhabditis elegans isolate C.eleg_S1A small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 15582 285 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16108963 16108963 PRJNA807685_P_NODE_32333_length_222_cov_2.951351_g31260_i0 PRJNA807685 32333 222 2.951351 6.55199922 Caenorhabditis elegans 6239 Nematoda Nematoda 370 4.79e-98   NTclustered gi|413006566|emb|Z92784.2| 6239 g31260 i0 99.507 89.2072072072072 203 1 91 0 20 222 26580 26782 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 19804 370 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19933102 19933102 PRJNA807685_P_NODE_17696_length_345_cov_1.857143_g16624_i0 PRJNA807685 17696 345 1.857143 6.40714335 Trichuris suis 68888 Nematoda Nematoda 103 2.4299999999999994e-24   NR KFD60198.1 68888 g16624 i0 51.4 1.77391304347826 105 49 89.6 2 310 2 67 171 KFD60198.1 hypothetical protein M514_09835 [Trichuris suis] diamond 612 103 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
22483246 22483246 PRJNA807685_P_NODE_11498_length_477_cov_42.984091_g10442_i0 PRJNA807685 11498 477 42.984091 205.03411407 Caenorhabditis elegans 6239 Nematoda Nematoda 811 0   NTclustered gi|25167357|ref|NR_000053.1| 6239 g10442 i0 99.774 83.1174004192872 442 1 93 0 1 442 443 2 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 39647 811 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23759289 23759289 PRJNA807685_P_NODE_56079_length_163_cov_1.849206_g55006_i0 PRJNA807685 56079 163 1.849206 3.01420578 Caenorhabditis elegans 6239 Nematoda Nematoda 69.4 1.35e-7   NTclustered gi|687866226|emb|LK928152.1| 6239 g55006 i0 95.349 1.05521472392638 43 2 42 0 29 71 9140 9098 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000504 blastn 172 69.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26800927 26800927 PRJNA807685_P_NODE_46521_length_179_cov_1.373239_g45448_i0 PRJNA807685 46521 179 1.373239 2.45809781 Trichuris suis 68888 Nematoda Nematoda 68.6 1.23e-11   NR KFD64092.1 68888 g45448 i0 55.7 17.3966480446927 61 24 98.9 2 3 179 374 433 KFD64092.1 hypothetical protein M514_23802 [Trichuris suis] diamond 3114 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
26864635 26864635 PRJNA807685_P_NODE_53661_length_167_cov_1.061538_g52588_i0 PRJNA807685 53661 167 1.061538 1.77276846 Mesorhabditis spiculigera 96644 Nematoda Nematoda 47.8 2.23e-4   NR CAJ0580575.1 96644 g52588 i0 54.8 2.26347305389222 42 18 75.4 1 39 164 185 225 CAJ0580575.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 378 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
27189364 27189364 PRJNA807685_P_NODE_59682_length_159_cov_1.073770_g58609_i0 PRJNA807685 59682 159 1.07377 1.7072943 Metazoa 33208 Nematoda Nematoda 44.3 0.00334   NR VDP01474.1 241478 g58609 i0 64.3 5.62264150943396 28 10 52.8 0 2 85 105 132 VDP01474.1 unnamed protein product [Soboliphyme baturini] diamond 894 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
27789710 27789710 PRJNA807685_P_NODE_64664_length_153_cov_1.612069_g63591_i0 PRJNA807685 64664 153 1.612069 2.46646557 Metazoa 33208 Nematoda Nematoda 45.4 0.00119   NR KAK5980047.1 6319 g63591 i0 46 2.94117647058824 50 26 98 1 3 152 79 127 KAK5980047.1 hypothetical protein GCK32_000148 [Trichostrongylus colubriformis] diamond 450 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
28980737 28980737 PRJNA807685_P_NODE_16668_length_361_cov_2.222222_g15598_i0 PRJNA807685 16668 361 2.222222 8.02222142 Meloidogyne enterolobii 390850 Nematoda Nematoda 44.3 0.0356   NR CAD2201923.1 390850 g15598 i0 32.8 0.556786703601108 67 34 50.7 2 102 284 108 169 CAD2201923.1 unnamed protein product [Meloidogyne enterolobii] diamond 201 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
29264526 29264526 PRJNA807685_P_NODE_45609_length_181_cov_1.361111_g44536_i0 PRJNA807685 45609 181 1.361111 2.46361091 Trichinella papuae 268474 Nematoda Nematoda 57.4 3.36e-8   NR KRZ77646.1 268474 g44536 i0 45.6 0.94475138121547 57 31 94.5 0 10 180 91 147 KRZ77646.1 Tigger transposable element-derived protein 4 [Trichinella papuae] diamond 171 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae
30307447 30307447 PRJNA807685_P_NODE_36592_length_205_cov_1.571429_g35519_i0 PRJNA807685 36592 205 1.571429 3.22142945 Soboliphyme baturini 241478 Nematoda Nematoda 82.8 1.77e-16   NR VDO93362.1 241478 g35519 i0 64.2 0.980487804878049 67 24 98 0 1 201 775 841 VDO93362.1 unnamed protein product [Soboliphyme baturini] diamond 201 82.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
30442315 30442315 PRJNA807685_P_NODE_37213_length_203_cov_1.355422_g36140_i0 PRJNA807685 37213 203 1.355422 2.75150666 Metazoa 33208 Nematoda Nematoda 61.6 4.88e-9   NR KRZ55879.1 6335 g36140 i0 47.6 17.6748768472906 63 32 91.6 1 14 199 398 460 KRZ55879.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Trichinella nativa] diamond 3588 62 0.993548387096774 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
30726472 30726472 PRJNA807685_P_NODE_54934_length_165_cov_1.195312_g53861_i0 PRJNA807685 54934 165 1.195312 1.9722648 Caenorhabditis 6237 Nematoda Nematoda 49.3 6.18e-5   NR XP_045093902.1 6238 g53861 i0 58.5 2.98181818181818 41 16 72.7 1 124 5 150 190 XP_045093902.1 Protein CBR-ZMP-1 [Caenorhabditis briggsae] diamond 492 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
31887397 31887397 PRJNA807685_P_NODE_58777_length_160_cov_1.243902_g57704_i0 PRJNA807685 58777 160 1.243902 1.9902432 Mesorhabditis belari 2138241 Nematoda Nematoda 47.4 2.74e-4   NR CAJ0959873.1 2138241 g57704 i0 47.5 0.75 40 21 75 0 30 149 355 394 CAJ0959873.1 unnamed protein product, partial [Mesorhabditis belari] diamond 120 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;