RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA807685", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA807685 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30568275 30568275 PRJNA807685_P_NODE_17033_length_355_cov_1.849057_g15963_i0 PRJNA807685 17033 355 1.849057 6.56415235 Bacteria 2 Bacteria Bacteria 45.8 0.0103   NR HEY4647558.1 2448054 g15963 i0 34 2.29859154929577 94 61 79.4 1 2 283 141 233 HEY4647558.1 hypothetical protein [Gemmatimonadales bacterium] diamond 816 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30717564 30717564 PRJNA807685_P_NODE_24274_length_272_cov_1.336170_g23201_i0 PRJNA807685 24274 272 1.33617 3.6343824 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 140 1.7299999999999999e-40   NR HXE56495.1 2448054 g23201 i0 76.4 0.981617647058823 89 17 98.2 1 269 3 4 88 HXE56495.1 DinB family protein [Gemmatimonadales bacterium] diamond 267 140 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32402678 32402678 PRJNA807685_P_NODE_51499_length_170_cov_1.466165_g50426_i0 PRJNA807685 51499 170 1.466165 2.4924805 Pseudomonadati 3379134 Bacteria Bacteria 111 4.23e-27   NR MEP6780985.1 2026741 g50426 i0 91.1 1.97647058823529 56 5 98.8 0 1 168 311 366 MEP6780985.1 phage tail sheath C-terminal domain-containing protein [Gemmatimonadaceae bacterium] diamond 336 112 0.991071428571429 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;