RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA807347", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA807347 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
806253 806253 PRJNA807347_P_NODE_10501_length_263_cov_1.400000_g10398_i0 PRJNA807347 10501 263 1.4 3.682 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 134 8.34e-27   NTclustered gi|695373065|ref|XM_009516665.1| 67593 g10398 i0 78.125 16.7604562737643 224 39 83 10 3 221 481 699 Phytophthora sojae hypothetical protein mRNA blastn 4408 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
26959055 26959055 PRJNA807347_P_NODE_16942_length_242_cov_0.923077_g16839_i0 PRJNA807347 16942 242 0.923077 2.23384634 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 42 0.0478   NR CCI43591.1 65357 g16839 i0 45.2 1.04132231404959 42 23 52.1 0 136 11 26 67 CCI43591.1 unnamed protein product [Albugo candida] diamond 252 42 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31263757 31263757 PRJNA807347_P_NODE_15455_length_245_cov_0.901163_g15352_i0 PRJNA807347 15455 245 0.901163 2.20784935 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 51.6 2.4e-5   NR KAG9408157.1 112091 g15352 i0 47.2 2.42448979591837 53 28 64.9 0 245 87 108 160 KAG9408157.1 hypothetical protein AC1031_021405 [Aphanomyces cochlioides] diamond 594 51.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;