RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA806354", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA806354 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3357031 3357031 PRJNA806354_P_NODE_4103_length_669_cov_2.927852_g3996_i0 PRJNA806354 4103 669 2.927852 19.58732988 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 1098 0   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g3996 i0 96.263 262.866965620329 669 25 100 0 1 669 861 193 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 175858 1098 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
11009956 11009956 PRJNA806354_P_NODE_41549_length_239_cov_5.548193_g41440_i0 PRJNA806354 41549 239 5.548193 13.26018127 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 425 1.1e-114   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g41440 i0 98.745 267.97489539749 239 3 100 0 1 239 2190 2428 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 64046 425 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
22483011 22483011 PRJNA806354_P_NODE_39578_length_243_cov_7.982353_g39469_i0 PRJNA806354 39578 243 7.982353 19.39711779 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 449 6.65e-122   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g39469 i0 100 262.777777777778 243 0 100 0 1 243 2384 2626 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 63855 449 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;