RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA806354", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA806354 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
806030 806030 PRJNA806354_P_NODE_34661_length_253_cov_1.238889_g34552_i0 PRJNA806354 34661 253 1.238889 3.13438917 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 344 3.3799999999999993e-90   NTclustered gi|2874253728|emb|OY969570.1| 412054 g34552 i0 91.304 115.588932806324 253 20 99 2 1 252 173516 173767 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 29244 344 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8458891 8458891 PRJNA806354_P_NODE_11707_length_413_cov_2.985294_g11598_i0 PRJNA806354 11707 413 2.985294 12.32926422 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 520 9.05e-143   NTclustered gi|2874253978|emb|OY970303.1| 412054 g11598 i0 89.688 34.728813559322 417 30 100 11 1 413 1903197 1903604 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 14343 520 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14834264 14834264 PRJNA806354_P_NODE_34152_length_254_cov_2.674033_g34043_i0 PRJNA806354 34152 254 2.674033 6.79204382 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 340 4.399999999999999e-89   NTclustered gi|2874253728|emb|OY969570.1| 412054 g34043 i0 90.98 162 255 20 100 3 1 254 172320 172068 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 41148 340 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;