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contig_metadata

21 rows where bioproject = "PRJNA804229" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 21 ✖

bioproject 1

  • PRJNA804229 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2079776 2079776 PRJNA804229_S_NODE_36962_length_319_cov_8.101449_g36004_i0 PRJNA804229 36962 319 8.101449 25.84362231 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.008   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g36004 i0 100 0.178683385579937 29 0 9 0 1 29 13 41 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
4630377 4630377 PRJNA804229_S_NODE_122864_length_184_cov_1.397163_g121906_i0 PRJNA804229 122864 184 1.397163 2.57077992 Parvovirus macaca3116 3117124 Viruses Viruses 52.8 0.016   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g121906 i0 100 0.152173913043478 28 0 15 0 157 184 28 1 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 28 52.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
4632489 4632489 PRJNA804229_S_NODE_38364_length_315_cov_2.029412_g37406_i0 PRJNA804229 38364 315 2.029412 6.3926478 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.008   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g37406 i0 96.97 0.193650793650794 33 0 10 1 283 315 37 6 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 61 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
6326003 6326003 PRJNA804229_S_NODE_166385_length_158_cov_1.252174_g165427_i0 PRJNA804229 166385 158 1.252174 1.97843492 Viruses 10239 Viruses Viruses 193 7.38e-45   NTclustered gi|2051094702|tpg|BK014912.1| 2826306 g165427 i0 88.608 2 158 18 100 0 1 158 8200 8357 MAG TPA_asm: Siphoviridae sp. ctNmW2, partial genome blastn 316 193 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Siphoviridae sp. ctNmW2
7183060 7183060 PRJNA804229_S_NODE_66906_length_248_cov_0.956098_g65948_i0 PRJNA804229 66906 248 0.956098 2.37112304 Jujube closterovirus 1 3043313 Viruses Viruses 58.4 4.82e-4   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g65948 i0 100 0.237903225806452 31 0 13 0 1 31 6 36 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 59 58.4 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
10150514 10150514 PRJNA804229_S_NODE_137608_length_174_cov_1.320611_g136650_i0 PRJNA804229 137608 174 1.320611 2.29786314 Copiparvovirus 1511888 Viruses Viruses 311 2.19e-80   NTclustered gi|1725344901|ref|NC_031959.2| 1917013 g136650 i0 98.851 5 174 2 100 0 1 174 4777 4604 Bosavirus MS-2016a, complete genome blastn 870 311 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Copiparvovirus Copiparvovirus ungulate5
11425903 11425903 PRJNA804229_S_NODE_57689_length_265_cov_2.153153_g56731_i0 PRJNA804229 57689 265 2.153153 5.70585545 Copiparvovirus 1511888 Viruses Viruses 444 3.42e-120   NTclustered gi|1725344901|ref|NC_031959.2| 1917013 g56731 i0 99.588 3.93962264150943 243 1 92 0 1 243 2415 2657 Bosavirus MS-2016a, complete genome blastn 1044 444 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Copiparvovirus Copiparvovirus ungulate5
13554994 13554994 PRJNA804229_S_NODE_102171_length_201_cov_2.424051_g101213_i0 PRJNA804229 102171 201 2.424051 4.87234251 Caudoviricetes sp. 2832643 Viruses Viruses 231 2.09e-56   NTclustered gi|2053220447|tpg|BK017336.1| 2832643 g101213 i0 89.944 1.2636815920398 179 18 89 0 23 201 13263 13085 MAG TPA_asm: Caudoviricetes sp. isolate ctjqC1, partial genome blastn 254 231 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
16524749 16524749 PRJNA804229_S_NODE_110933_length_193_cov_3.673333_g109975_i0 PRJNA804229 110933 193 3.673333 7.08953269 Copiparvovirus 1511888 Viruses Viruses 357 3.1499999999999996e-94   NTclustered gi|1725344901|ref|NC_031959.2| 1917013 g109975 i0 100 5 193 0 100 0 1 193 4149 4341 Bosavirus MS-2016a, complete genome blastn 965 357 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Copiparvovirus Copiparvovirus ungulate5
18655794 18655794 PRJNA804229_S_NODE_5215_length_622_cov_7.250432_g4445_i0 PRJNA804229 5215 622 7.250432 45.09768704 Gammaretrovirus murleu 3428959 Viruses Viruses 977 0   NTclustered gi|38155067|gb|AY349137.1| 11786 g4445 i0 94.803 95.2250803858521 635 20 100 2 1 622 671 37 Murine leukemia virus isolate Lung-1-2 defective envelope transcript gene, sequence blastn 59230 977 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19929915 19929915 PRJNA804229_S_NODE_172536_length_155_cov_1.285714_g171578_i0 PRJNA804229 172536 155 1.285714 1.9928567 Prokaryotic dsDNA virus sp. 2591644 Viruses Viruses 54.7 0.004   NTclustered gi|1707894375|gb|MK892579.1| 2591644 g171578 i0 100 0.187096774193548 29 0 19 0 48 76 6609 6637 MAG: Prokaryotic dsDNA virus sp. isolate Unbinned_3907_contig-100_0, complete genome blastn 29 54.7 1 Viruses               Prokaryotic dsDNA virus sp.
21204278 21204278 PRJNA804229_S_NODE_121497_length_185_cov_1.507042_g120539_i0 PRJNA804229 121497 185 1.507042 2.7880277 Porcine bastrovirus 2588662 Viruses Viruses 54.7 0.004   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g120539 i0 100 0.308108108108108 29 0 16 0 157 185 41 13 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 57 54.7 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
21207318 21207318 PRJNA804229_S_NODE_74777_length_235_cov_1.750000_g73819_i0 PRJNA804229 74777 235 1.75 4.1125 Caudoviricetes sp. 2832643 Viruses Viruses 363 8.569999999999998e-96   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g73819 i0 94.468 393.348936170213 235 13 100 0 1 235 17939 18173 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 92437 363 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
21624015 21624015 PRJNA804229_S_NODE_117477_length_188_cov_1.655172_g116519_i0 PRJNA804229 117477 188 1.655172 3.11172336 Tetraparvovirus 1511911 Viruses Viruses 342 8.539999999999999e-90   NTclustered gi|1372080036|gb|MG745679.1| 494651 g116519 i0 99.468 73.563829787234 188 1 100 0 1 188 2896 3083 Bovine hokovirus 1 isolate Guarapuava nonstructural protein 1 and capsid protein 1 genes, complete cds blastn 13830 342 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Tetraparvovirus Tetraparvovirus ungulate1
22481842 22481842 PRJNA804229_S_NODE_71218_length_240_cov_5.172589_g70260_i0 PRJNA804229 71218 240 5.172589 12.4142136 Gammaretrovirus murleu 3428959 Viruses Viruses 438 1.4199999999999995e-118   NTclustered gi|1167936530|gb|KY574504.1| 11786 g70260 i0 99.583 100.004166666667 240 1 100 0 1 240 7045 6806 Murine leukemia virus isolate AKR13, complete genome blastn 24001 438 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
23757302 23757302 PRJNA804229_S_NODE_61599_length_257_cov_3.065421_g60641_i0 PRJNA804229 61599 257 3.065421 7.87813197 Bacteriophage sp. 38018 Viruses Viruses 54.7 0.006   NTclustered gi|2057076630|tpg|BK037829.1| 38018 g60641 i0 100 0.439688715953307 29 0 11 0 66 94 7630 7658 MAG TPA_asm: Bacteriophage sp. isolate ctiyJ22, partial genome blastn 113 54.7 1 Viruses               Bacteriophage sp.
25028470 25028470 PRJNA804229_S_NODE_123200_length_184_cov_1.021277_g122242_i0 PRJNA804229 123200 184 1.021277 1.87914968 Carlavirus latensdianthi 3427766 Viruses Viruses 54.7 0.004   NTclustered gi|1995060321|gb|MN450069.1| 12164 g122242 i0 100 0.766304347826087 29 0 16 0 1 29 13 41 Carnation latent virus isolate KL, complete genome blastn 141 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensdianthi
25448724 25448724 PRJNA804229_S_NODE_7120_length_558_cov_13.246602_g6249_i0 PRJNA804229 7120 558 13.246602 73.91603916 Copiparvovirus 1511888 Viruses Viruses 992 0   NTclustered gi|1725344901|ref|NC_031959.2| 1917013 g6249 i0 99.815 4.54121863799283 540 1 97 0 19 558 4808 5347 Bosavirus MS-2016a, complete genome blastn 2534 992 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Copiparvovirus Copiparvovirus ungulate5
26927582 26927582 PRJNA804229_S_NODE_147302_length_168_cov_1.536000_g146344_i0 PRJNA804229 147302 168 1.536 2.58048 Marsupial endogenous gammaretrovirus 2 3386030 Viruses Viruses 44.3 0.00404   NR DBA62711.1 3386030 g146344 i0 53.5 1.53571428571429 43 14 66.1 1 58 168 197 239 DBA62711.1 TPA_asm: Pol [Marsupial endogenous gammaretrovirus 2] diamond 258 44.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 2
27307168 27307168 PRJNA804229_S_NODE_159443_length_161_cov_2.033898_g158485_i0 PRJNA804229 159443 161 2.033898 3.27457578 Caudoviricetes sp. 2832643 Viruses Viruses 57.4 8.22e-8   NR XOR55634.1 2832643 g158485 i0 54.7 0.987577639751553 53 24 98.8 0 2 160 310 362 XOR55634.1 MAG: TerL [Caudoviricetes sp.] diamond 159 57.4 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
32108934 32108934 PRJNA804229_S_NODE_13698_length_449_cov_3.790640_g12755_i0 PRJNA804229 13698 449 3.79064 17.0199736 Gammaretrovirus murleu 3428959 Viruses Viruses 309 2.689999999999999e-101   NR 8WUS_E 11801 g12755 i0 99.3 9.9554565701559 149 1 99.6 0 2 448 124 272 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 4470 309 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;