RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA804229", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA804229 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3354207 3354207 PRJNA804229_S_NODE_178543_length_153_cov_0.872727_g177585_i0 PRJNA804229 178543 153 0.872727 1.33527231 Acidobacterium capsulatum 33075 Bacteria Bacteria 126 7.28e-25   NTclustered gi|84452195|emb|AM180893.1| 240015 g177585 i0 86.726 103.21568627451 113 15 74 0 1 113 530 642 Acidobacterium capsulatum partial 23S rRNA gene, strain DSM 11244 blastn 15792 126 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
28190957 28190957 PRJNA804229_S_NODE_145146_length_169_cov_1.944444_g144188_i0 PRJNA804229 145146 169 1.944444 3.28611036 Acidobacteriota bacterium 1978231 Bacteria Bacteria 42.4 0.0162   NR MBI3682431.1 1978231 g144188 i0 41.5 0.727810650887574 41 24 72.8 0 7 129 55 95 MBI3682431.1 HAD family phosphatase [Acidobacteriota bacterium] diamond 123 42.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;