RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA804229" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA804229 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18655794 18655794 PRJNA804229_S_NODE_5215_length_622_cov_7.250432_g4445_i0 PRJNA804229 5215 622 7.250432 45.09768704 Gammaretrovirus murleu 3428959 Viruses Viruses 977 0   NTclustered gi|38155067|gb|AY349137.1| 11786 g4445 i0 94.803 95.2250803858521 635 20 100 2 1 622 671 37 Murine leukemia virus isolate Lung-1-2 defective envelope transcript gene, sequence blastn 59230 977 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22481842 22481842 PRJNA804229_S_NODE_71218_length_240_cov_5.172589_g70260_i0 PRJNA804229 71218 240 5.172589 12.4142136 Gammaretrovirus murleu 3428959 Viruses Viruses 438 1.4199999999999995e-118   NTclustered gi|1167936530|gb|KY574504.1| 11786 g70260 i0 99.583 100.004166666667 240 1 100 0 1 240 7045 6806 Murine leukemia virus isolate AKR13, complete genome blastn 24001 438 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
26927582 26927582 PRJNA804229_S_NODE_147302_length_168_cov_1.536000_g146344_i0 PRJNA804229 147302 168 1.536 2.58048 Marsupial endogenous gammaretrovirus 2 3386030 Viruses Viruses 44.3 0.00404   NR DBA62711.1 3386030 g146344 i0 53.5 1.53571428571429 43 14 66.1 1 58 168 197 239 DBA62711.1 TPA_asm: Pol [Marsupial endogenous gammaretrovirus 2] diamond 258 44.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 2
32108934 32108934 PRJNA804229_S_NODE_13698_length_449_cov_3.790640_g12755_i0 PRJNA804229 13698 449 3.79064 17.0199736 Gammaretrovirus murleu 3428959 Viruses Viruses 309 2.689999999999999e-101   NR 8WUS_E 11801 g12755 i0 99.3 9.9554565701559 149 1 99.6 0 2 448 124 272 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 4470 309 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;