RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA804229", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA804229 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7180251 7180251 PRJNA804229_S_NODE_124226_length_183_cov_1.371429_g123268_i0 PRJNA804229 124226 183 1.371429 2.50971507 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 62.1 2.59e-5   NTclustered gi|56407635|gb|AY834401.1| 6183 g123268 i0 100 18.0327868852459 33 0 18 0 1 33 1 33 Schistosoma mansoni SINE HpaI genomic sequence blastn 3300 62.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
7180546 7180546 PRJNA804229_S_NODE_135186_length_175_cov_2.909091_g134228_i0 PRJNA804229 135186 175 2.909091 5.09090925 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.015   NTclustered gi|690455235|emb|LN000889.1| 99802 g134228 i0 100 0.16 28 0 16 0 71 98 13136 13163 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0000879 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
16105601 16105601 PRJNA804229_S_NODE_168993_length_156_cov_65.194690_g168035_i0 PRJNA804229 168993 156 65.19469 101.7037164 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 283 4.1899999999999994e-72   NTclustered gi|56757963|gb|AY815390.1| 6182 g168035 i0 99.363 125.205128205128 157 0 100 1 1 156 1282 1438 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 19532 283 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
23755655 23755655 PRJNA804229_S_NODE_16599_length_422_cov_2.627968_g15649_i0 PRJNA804229 16599 422 2.627968 11.09002496 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 780 0   NTclustered gi|1124902734|gb|AY812498.2| 6182 g15649 i0 100 99.8056872037915 422 0 100 0 1 422 906 1327 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 42118 780 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28759439 28759439 PRJNA804229_S_NODE_143587_length_170_cov_1.889764_g142629_i0 PRJNA804229 143587 170 1.889764 3.2125988 Paragonimus heterotremus 100268 Platyhelminthes Platyhelminthes 40 0.0461   NR KAF5394634.1 100268 g142629 i0 42.5 0.705882352941177 40 17 70.6 1 19 138 43 76 KAF5394634.1 Zinc finger C3HC4 type [Paragonimus heterotremus] diamond 120 40 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus heterotremus
31033936 31033936 PRJNA804229_S_NODE_120955_length_185_cov_2.711268_g119997_i0 PRJNA804229 120955 185 2.711268 5.0158458 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 128 3.65e-33   NR AAX28387.3 6182 g119997 i0 100 2.96756756756757 61 0 98.9 0 185 3 438 498 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 549 128 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;