RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA801875" and tax_phylum = "Perkinsozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA801875 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6325729 6325729 PRJNA801875_P_NODE_1565_length_305_cov_4.888889_g1462_i0 PRJNA801875 1565 305 4.888889 14.91111145 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.66e-15   NTclustered gi|22417090|gb|AF509333.1| 32597 g1462 i0 85.714 1.50491803278689 91 11 30 1 212 302 6413 6325 Perkinsus atlanticus 5S ribosomal RNA, small subunit ribosomal RNA genes, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 459 95.3 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
30496646 30496646 PRJNA801875_P_NODE_1133_length_380_cov_2.263768_g1030_i0 PRJNA801875 1133 380 2.263768 8.6023184 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 164 1.02e-48   NR XP_002778466.1 423536 g1030 i0 66.9 0.955263157894737 121 39 94.7 1 377 18 70 190 XP_002778466.1 cyclophilin, putative [Perkinsus marinus ATCC 50983] diamond 363 164 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;