RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA801875", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 8 ✖

tax_phylum 1

  • Myxococcota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA801875 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
801063 801063 PRJNA801875_P_NODE_401_length_705_cov_43.629851_g155_i1 PRJNA801875 401 705 43.629851 307.59044955 Pendulispora rubella 2741070 Bacteria Bacteria 1101 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g155 i1 95.021 173.025531914894 703 31 99 3 1 703 7289558 7288860 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 121983 1101 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
9729150 9729150 PRJNA801875_P_NODE_228_length_930_cov_30.401117_g155_i0 PRJNA801875 228 930 30.401117 282.7303881 Pendulispora rubella 2741070 Bacteria Bacteria 1166 0   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g155 i0 89.525 122.418279569892 926 89 99 7 1 923 7289128 7290048 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 113849 1166 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
23753767 23753767 PRJNA801875_P_NODE_4599_length_152_cov_8.282051_g4496_i0 PRJNA801875 4599 152 8.282051 12.58871752 Labilithrix luteola 1391654 Bacteria Bacteria 217 4.16e-52   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4496 i0 99.167 124.486842105263 120 1 97 0 30 149 3945041 3944922 Labilithrix luteola strain DSM 27648, complete genome blastn 18922 217 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
27623005 27623005 PRJNA801875_P_NODE_3544_length_174_cov_1.683453_g3441_i0 PRJNA801875 3544 174 1.683453 2.92920822 Myxococcota bacterium 2818507 Bacteria Bacteria 75.5 4.14e-14   NR HOI08972.1 2818507 g3441 i0 57.1 0.96551724137931 56 23 96.6 1 173 6 620 674 HOI08972.1 MopE-related protein [Myxococcota bacterium] diamond 168 75.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30758205 30758205 PRJNA801875_P_NODE_1234_length_362_cov_1.730887_g1131_i0 PRJNA801875 1234 362 1.730887 6.26581094 Pseudomonadati 3379134 Bacteria Bacteria 91.7 1.1e-18   NR MSQ85130.1 2026763 g1131 i0 51.5 1.84806629834254 103 50 85.4 0 356 48 296 398 MSQ85130.1 hypothetical protein [Myxococcales bacterium] diamond 669 91.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31349834 31349834 PRJNA801875_P_NODE_1356_length_339_cov_3.026316_g1253_i0 PRJNA801875 1356 339 3.026316 10.25921124 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57.4 8.37e-7   NR MBC8459634.1 2026735 g1253 i0 37.2 1.98230088495575 113 67 98.2 3 2 334 845 955 MBC8459634.1 RHS repeat protein [Deltaproteobacteria bacterium] diamond 672 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31634301 31634301 PRJNA801875_P_NODE_4216_length_159_cov_1.604839_g4113_i0 PRJNA801875 4216 159 1.604839 2.55169401 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.9 2.27e-8   NR MBM4344022.1 2026735 g4113 i0 51 0.924528301886792 49 24 92.5 0 12 158 1425 1473 MBM4344022.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 147 58.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31729200 31729200 PRJNA801875_P_NODE_1017_length_408_cov_2.061662_g914_i0 PRJNA801875 1017 408 2.061662 8.41158096 Myxococcaceae bacterium 2484252 Bacteria Bacteria 204 1.05e-61   NR RYZ13579.1 2484252 g914 i0 73.5 1 136 36 100 0 408 1 57 192 RYZ13579.1 MAG: ABC-F family ATP-binding cassette domain-containing protein, partial [Myxococcaceae bacterium] diamond 408 204 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;