RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA801875", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 3 ✖

bioproject 1

  • PRJNA801875 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27054212 27054212 PRJNA801875_P_NODE_1902_length_268_cov_2.326180_g1799_i0 PRJNA801875 1902 268 2.32618 6.2341624 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 128 8.55e-34   NR KOO23867.1 1460289 g1799 i0 63.2 1.94776119402985 87 32 97.4 0 264 4 176 262 KOO23867.1 alteRNAtive oxidase [Chrysochromulina tobinii] diamond 522 128 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
29674810 29674810 PRJNA801875_P_NODE_2290_length_232_cov_0.969543_g2187_i0 PRJNA801875 2290 232 0.969543 2.24933976 Prymnesium parvum 97485 Haptophyta other_Eukaryota 53.1 6.67e-6   NR KAL1507425.1 97485 g2187 i0 31.5 0.943965517241379 73 50 94.4 0 230 12 216 288 KAL1507425.1 hypothetical protein AB1Y20_008264 [Prymnesium parvum] diamond 219 53.1 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
31286304 31286304 PRJNA801875_P_NODE_4595_length_153_cov_0.932203_g4492_i0 PRJNA801875 4595 153 0.932203 1.42627059 Isochrysis galbana 37099 Haptophyta other_Eukaryota 62.4 1.18e-9   NR AAW79315.1 37099 g4492 i0 65 3.13725490196078 40 14 78.4 0 32 151 324 363 AAW79315.1 chloroplast ferredoxin NADP(+) reductase, partial [Isochrysis galbana] diamond 480 62.4 1 Eukaryota Haptista   Haptophyta   Isochrysidales Isochrysidaceae Isochrysis Isochrysis galbana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;