RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA801875", tax_clade = "Bacteria candidate phyla" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA801875 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30789690 30789690 PRJNA801875_P_NODE_3794_length_168_cov_1.481203_g3691_i0 PRJNA801875 3794 168 1.481203 2.48842104 Bacteria 2 Bacteria Bacteria 43.5 0.00695   NR MFH1456668.1 2052139 g3691 i0 70 2.14285714285714 30 9 53.6 0 77 166 26 55 MFH1456668.1 50S ribosomal protein L2 [Patescibacteria group bacterium] diamond 360 43.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
30875635 30875635 PRJNA801875_P_NODE_2094_length_247_cov_2.306604_g1991_i0 PRJNA801875 2094 247 2.306604 5.69731188 Patescibacteria group bacterium 2052139 Bacteria Bacteria 145 9.77e-40   NR MCL4419852.1 2052139 g1991 i0 80.2 0.983805668016194 81 16 98.4 0 3 245 60 140 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 243 145 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31349833 31349833 PRJNA801875_P_NODE_1116_length_384_cov_1.217765_g1013_i0 PRJNA801875 1116 384 1.217765 4.6762176 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 77 1.88e-13   NR MCZ6479083.1 2072417 g1013 i0 47.4 4.5390625 78 41 60.9 0 238 5 55 132 MCZ6479083.1 VIT domain-containing protein [Candidatus Methylomirabilota bacterium] diamond 1743 77 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;