RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA800090", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA800090 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11425136 11425136 PRJNA800090_P_NODE_84209_length_362_cov_1.901024_g82024_i0 PRJNA800090 84209 362 1.901024 6.88170688 Desulfosarcina 2299 Bacteria Bacteria 52.8 0.034   NTclustered gi|2108019731|gb|CP070768.1| 2044940 g82024 i0 100 0.154696132596685 28 0 8 0 102 129 1630609 1630582 MAG: Desulfobacterales bacterium isolate bin239 chromosome blastn 56 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
27338690 27338690 PRJNA800090_P_NODE_105063_length_316_cov_2.113360_g102878_i0 PRJNA800090 105063 316 2.11336 6.6782176 Desulfosalsimonadaceae bacterium 3060584 Bacteria Bacteria 46.6 0.00366   NR MFO8112632.1 3060584 g102878 i0 39.7 0.740506329113924 78 41 73.1 3 312 82 304 376 MFO8112632.1 pyruvate kinase [Desulfosalsimonadaceae bacterium] diamond 234 46.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosalsimonadaceae   Desulfosalsimonadaceae bacterium
27528014 27528014 PRJNA800090_P_NODE_184723_length_231_cov_0.901235_g182538_i0 PRJNA800090 184723 231 0.901235 2.08185285 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 90.1 6.54e-20   NR MFC1835360.1 2202153 g182538 i0 55.7 2.80519480519481 70 30 89.6 1 25 231 162 231 MFC1835360.1 protein-ADP-ribose hydrolase [Thermodesulfobacteriota bacterium] diamond 648 90.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
28601693 28601693 PRJNA800090_P_NODE_31467_length_681_cov_1.665033_g29370_i0 PRJNA800090 31467 681 1.665033 11.33887473 Desulfoluna sp. 2045199 Bacteria Bacteria 147 2.06e-36   NR WP_300668609.1 2045199 g29370 i0 38.7 2.00440528634361 225 128 96.9 5 680 21 235 454 WP_300668609.1 Ig-like domain-containing protein [Desulfoluna sp.] diamond 1365 147 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfolunaceae Desulfoluna Desulfoluna sp.
31033880 31033880 PRJNA800090_P_NODE_172815_length_236_cov_0.874251_g170630_i0 PRJNA800090 172815 236 0.874251 2.06323236 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 53.1 7.12e-6   NR RJQ83260.1 2049433 g170630 i0 54.1 1.22033898305085 37 17 47 0 234 124 27 63 RJQ83260.1 MAG: alpha-hydroxy-acid oxidizing protein [Desulfobacteraceae bacterium] diamond 288 53.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
32781043 32781043 PRJNA800090_P_NODE_177000_length_234_cov_0.884848_g174815_i0 PRJNA800090 177000 234 0.884848 2.07054432 root 1 Root_unresolved Root_unresolved 84.3 4.13e-17   NR WP_015906139.1 2296 g174815 i0 59.7 12.6538461538462 77 15 98.7 1 232 2 253 313 WP_015906139.1 chorismate synthase [Desulforapulum autotrophicum] diamond 2961 84.7 0.995277449822904 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulforapulum Desulforapulum autotrophicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;