RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA800090" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 7 ✖

bioproject 1

  • PRJNA800090 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4625994 4625994 PRJNA800090_P_NODE_1544_length_2461_cov_3.339883_g1328_i0 PRJNA800090 1544 2461 3.339883 82.19452063 RD114 retrovirus 11834 Viruses Viruses 4098 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g1328 i0 99.91 41.1767574156847 2225 2 100 0 1 2225 8107 5883 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 101336 4098 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
8450842 8450842 PRJNA800090_P_NODE_1647_length_2420_cov_4.449171_g1421_i0 PRJNA800090 1647 2420 4.449171 107.6699382 Betaretrovirus maspfimon 3427294 Viruses Viruses 4030 0   NTclustered gi|334702|gb|M12349.1|SIVMPCG 11855 g1421 i0 99.773 16.4223140495868 2198 3 100 1 1 2196 8437 6240 Simian Mason-Pfizer D-type retrovirus (MPMV/6A), complete genome blastn 39742 4030 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
13553451 13553451 PRJNA800090_P_NODE_79131_length_377_cov_1.185065_g76946_i0 PRJNA800090 79131 377 1.185065 4.46769505 Betaretrovirus maspfimon 3427294 Viruses Viruses 693 0   NTclustered gi|334702|gb|M12349.1|SIVMPCG 11855 g76946 i0 100 9.86737400530504 375 0 99 0 1 375 5661 6035 Simian Mason-Pfizer D-type retrovirus (MPMV/6A), complete genome blastn 3720 693 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Betaretrovirus Betaretrovirus maspfimon
17379153 17379153 PRJNA800090_S_NODE_294_length_1639_cov_7.617834_g277_i0 PRJNA800090 294 1639 7.617834 124.85629926 Gammaretrovirus Kimursar 3428956 Viruses Viruses 1829 0   NTclustered gi|1694998360|ref|NC_043426.1| 11808 g277 i0 97.672 50.1781574130567 1074 8 65 11 9 1079 1060 1 Kirsten murine sarcoma virus (KiMSV) p15 env coding region and long terminal repeat (LTR) blastn 82242 1829 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus Kimursar
21202466 21202466 PRJNA800090_P_NODE_88897_length_350_cov_2.434164_g86712_i0 PRJNA800090 88897 350 2.434164 8.519574 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.033   NTclustered gi|1625847814|gb|MK384866.1| 11676 g86712 i0 100 0.08 28 0 8 0 30 57 6057 6084 HIV-1 isolate 37Pt1-2010-P2E2 from USA defective genome blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
25024925 25024925 PRJNA800090_P_NODE_190380_length_229_cov_0.900000_g188195_i0 PRJNA800090 190380 229 0.9 2.061 Alpharetrovirus avileu 3426267 Viruses Viruses 405 1.36e-108   NTclustered gi|1765883905|gb|MK683481.1| 11864 g188195 i0 98.684 97.8558951965066 228 3 99 0 2 229 6803 6576 Avian leukosis virus isolate GDHN-YH2, complete genome blastn 22409 405 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
25027297 25027297 PRJNA800090_S_NODE_29600_length_236_cov_1.724551_g29488_i0 PRJNA800090 29600 236 1.724551 4.06994036 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.021   NTclustered gi|1625847814|gb|MK384866.1| 11676 g29488 i0 100 0.11864406779661 28 0 12 0 30 57 6057 6084 HIV-1 isolate 37Pt1-2010-P2E2 from USA defective genome blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;