RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA800090", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA800090 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26958967 26958967 PRJNA800090_P_NODE_123382_length_287_cov_1.605505_g121197_i0 PRJNA800090 123382 287 1.605505 4.60779935 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 49.3 3.23e-4   NR HEY4307265.1 2026741 g121197 i0 32.3 1.93379790940767 93 58 92 1 23 286 551 643 HEY4307265.1 invasin domain 3-containing protein [Gemmatimonadaceae bacterium] diamond 555 49.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29391030 29391030 PRJNA800090_P_NODE_104289_length_318_cov_1.088353_g102104_i0 PRJNA800090 104289 318 1.088353 3.46096254 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 68.2 2.58e-11   NR TVR61403.1 2448054 g102104 i0 36.2 0.990566037735849 105 60 99.1 1 4 318 13 110 TVR61403.1 MAG: PH domain-containing protein [Gemmatimonadales bacterium] diamond 315 68.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30591178 30591178 PRJNA800090_P_NODE_184533_length_231_cov_0.901235_g182348_i0 PRJNA800090 184533 231 0.901235 2.08185285 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 65.5 3.19e-10   NR HUX33533.1 2026741 g182348 i0 54.4 2.7012987012987 68 31 88.3 0 22 225 504 571 HUX33533.1 IPT/TIG domain-containing protein [Gemmatimonadaceae bacterium] diamond 624 65.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;