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contig_metadata

20 rows where bioproject = "PRJNA800053", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 20 ✖

tax_phylum 1

  • Pisuviricota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA800053 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
796237 796237 PRJNA800053_P_NODE_24661_length_231_cov_2.132911_g24497_i0 PRJNA800053 24661 231 2.132911 4.92702441 Betacoronavirus pandemicum 3418604 Viruses Viruses 427 2.9399999999999998e-115   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g24497 i0 100 100 231 0 100 0 1 231 11866 11636 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 23100 427 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2071925 2071925 PRJNA800053_P_NODE_10922_length_297_cov_1.375000_g10758_i0 PRJNA800053 10922 297 1.375 4.08375 Betacoronavirus pandemicum 3418604 Viruses Viruses 549 8.029999999999997e-152   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g10758 i0 100 100 297 0 100 0 1 297 21292 21588 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 29700 549 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
3347279 3347279 PRJNA800053_P_NODE_2763_length_522_cov_1.367483_g2603_i0 PRJNA800053 2763 522 1.367483 7.13826126 Betacoronavirus pandemicum 3418604 Viruses Viruses 965 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g2603 i0 100 100 522 0 100 0 1 522 15671 16192 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 52200 965 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7174609 7174609 PRJNA800053_P_NODE_706_length_916_cov_2.922894_g585_i0 PRJNA800053 706 916 2.922894 26.77370904 Betacoronavirus pandemicum 3418604 Viruses Viruses 1692 0   NTclustered gi|1918190895|gb|MW153748.1| 2697049 g585 i0 100 101.482532751092 916 0 100 0 1 916 23799 22884 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/VIC8344/2020, complete genome blastn 92958 1692 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9724367 9724367 PRJNA800053_P_NODE_3368_length_481_cov_1.485294_g3205_i0 PRJNA800053 3368 481 1.485294 7.14426414 Betacoronavirus pandemicum 3418604 Viruses Viruses 889 0   NTclustered gi|2045000472|gb|MZ287516.1| 2697049 g3205 i0 100 100 481 0 100 0 1 481 12603 13083 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-FG-034863/2021 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 48100 889 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9724369 9724369 PRJNA800053_P_NODE_4228_length_436_cov_2.118457_g4065_i0 PRJNA800053 4228 436 2.118457 9.23647252 Betacoronavirus pandemicum 3418604 Viruses Viruses 806 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g4065 i0 100 100 436 0 100 0 1 436 24685 25120 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 43600 806 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11000065 11000065 PRJNA800053_P_NODE_16269_length_257_cov_1.798913_g16105_i0 PRJNA800053 16269 257 1.798913 4.62320641 Betacoronavirus pandemicum 3418604 Viruses Viruses 388 1.5699999999999998e-103   NTclustered gi|2063769173|emb|OU326123.1| 2697049 g16105 i0 99.533 100.229571984436 214 0 100 1 1 213 6367 6580 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 25759 388 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11000078 11000078 PRJNA800053_P_NODE_17609_length_251_cov_0.865169_g17445_i0 PRJNA800053 17609 251 0.865169 2.17157419 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 344 3.3499999999999998e-90   NTclustered gi|2756424066|gb|PP745825.1| 3003959 g17445 i0 100 0.741035856573705 186 0 74 0 66 251 1446 1261 MAG: Picornavirales sp. isolate 154_18939 genomic sequence blastn 186 344 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
11000172 11000172 PRJNA800053_P_NODE_7509_length_345_cov_1.661765_g7345_i0 PRJNA800053 7509 345 1.661765 5.73308925 Betacoronavirus pandemicum 3418604 Viruses Viruses 638 1.97e-178   NTclustered gi|2414454682|gb|OQ063416.1| 2697049 g7345 i0 100 99.7130434782609 345 0 100 0 1 345 17535 17191 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CO-CDPHE-2103721117/2022 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 34401 638 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
13549774 13549774 PRJNA800053_P_NODE_16771_length_254_cov_1.679558_g16607_i0 PRJNA800053 16771 254 1.679558 4.26607732 Betacoronavirus pandemicum 3418604 Viruses Viruses 470 5.37e-128   NTclustered gi|2626234388|emb|OY822405.1| 2697049 g16607 i0 100 100 254 0 100 0 1 254 12072 12325 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 25400 470 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
13549796 13549796 PRJNA800053_P_NODE_1871_length_615_cov_2.127306_g1716_i0 PRJNA800053 1871 615 2.127306 13.0829319 Betacoronavirus pandemicum 3418604 Viruses Viruses 1136 0   NTclustered gi|1854182511|gb|MT605815.1| 2697049 g1716 i0 100 100 615 0 100 0 1 615 124 738 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome blastn 61500 1136 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14824662 14824662 PRJNA800053_P_NODE_5272_length_397_cov_1.641975_g5109_i0 PRJNA800053 5272 397 1.641975 6.51864075 Betacoronavirus pandemicum 3418604 Viruses Viruses 734 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g5109 i0 100 100 397 0 100 0 1 397 3652 3256 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 39700 734 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17374697 17374697 PRJNA800053_P_NODE_7514_length_345_cov_1.536765_g7350_i0 PRJNA800053 7514 345 1.536765 5.30183925 Betacoronavirus pandemicum 3418604 Viruses Viruses 638 1.97e-178   NTclustered gi|2418547206|gb|OQ139235.1| 2697049 g7350 i0 100 100 345 0 100 0 1 345 10851 10507 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-STM-7Z7DQ5EQZ/2022, complete genome blastn 34500 638 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18647621 18647621 PRJNA800053_P_NODE_10715_length_299_cov_3.681416_g10551_i0 PRJNA800053 10715 299 3.681416 11.00743384 Betacoronavirus pandemicum 3418604 Viruses Viruses 553 6.25e-153   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g10551 i0 100 100 299 0 100 0 1 299 1063 765 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 29900 553 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22473385 22473385 PRJNA800053_P_NODE_2778_length_521_cov_2.107143_g2618_i0 PRJNA800053 2778 521 2.107143 10.97821503 Betacoronavirus pandemicum 3418604 Viruses Viruses 963 0   NTclustered gi|2777314969|emb|OZ121841.1| 2697049 g2618 i0 100 100 521 0 100 0 1 521 13790 14310 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 52100 963 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22473390 22473390 PRJNA800053_P_NODE_558_length_1011_cov_1.892324_g450_i0 PRJNA800053 558 1011 1.892324 19.13139564 Betacoronavirus pandemicum 3418604 Viruses Viruses 1868 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g450 i0 100 100 1011 0 100 0 1 1011 21642 22652 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 101100 1868 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23748859 23748859 PRJNA800053_P_NODE_13739_length_274_cov_2.676617_g13575_i0 PRJNA800053 13739 274 2.676617 7.33393058 Betacoronavirus pandemicum 3418604 Viruses Viruses 507 4.47e-139   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g13575 i0 100 100 274 0 100 0 1 274 24119 24392 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 27400 507 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23748950 23748950 PRJNA800053_P_NODE_24879_length_227_cov_2.370130_g24715_i0 PRJNA800053 24879 227 2.37013 5.3801951 Betacoronavirus pandemicum 3418604 Viruses Viruses 420 4.81e-113   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g24715 i0 100 100 227 0 100 0 1 227 19909 20135 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 22700 420 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
27180240 27180240 PRJNA800053_P_NODE_12382_length_284_cov_1.639810_g12218_i0 PRJNA800053 12382 284 1.63981 4.6570604 Patatavirales sp. 2809655 Viruses Viruses 51.6 4.7e-5   NR WRQ64757.1 2809655 g12218 i0 32.3 1.61619718309859 96 51 94 3 269 3 544 632 WRQ64757.1 polyprotein 2 [Patatavirales sp.] diamond 459 51.6 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales     Patatavirales sp.
32362246 32362246 PRJNA800053_P_NODE_14039_length_272_cov_1.532663_g13875_i0 PRJNA800053 14039 272 1.532663 4.16884336 Picornaviridae sp. 1530251 Viruses Viruses 92.4 1.1e-19   NR URG14603.1 1530251 g13875 i0 52.8 1.94117647058824 89 41 98.2 1 4 270 154 241 URG14603.1 MAG: structural protein, partial [Picornaviridae sp.] diamond 528 92.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;