RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA800053" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA800053 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2071938 2071938 PRJNA800053_P_NODE_12542_length_283_cov_1.419048_g12378_i0 PRJNA800053 12542 283 1.419048 4.01590584 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 196 1.14e-45   NTclustered gi|2314715370|dbj|AP024673.1| 2682145 g12378 i0 80.303 0.932862190812721 264 48 93 4 3 264 16019 16280 MAG: Fimbriimonadales bacterium KatS3mg018 DNA, complete genome blastn 264 196 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
25022845 25022845 PRJNA800053_P_NODE_23060_length_242_cov_0.911243_g22896_i0 PRJNA800053 23060 242 0.911243 2.20520806 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 172 1.6e-38   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g22896 i0 81.395 65.5330578512397 215 37 88 3 22 234 896042 895829 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 15859 172 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
29264405 29264405 PRJNA800053_P_NODE_16789_length_254_cov_1.441989_g16625_i0 PRJNA800053 16789 254 1.441989 3.66265206 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 113 4.910000000000001e-27   NR GIV03706.1 2682145 g16625 i0 67.1 2.90551181102362 82 27 96.9 0 5 250 365 446 GIV03706.1 MAG: hypothetical protein KatS3mg015_2536 [Fimbriimonadales bacterium] diamond 738 113 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium
30338873 30338873 PRJNA800053_P_NODE_16392_length_256_cov_2.393443_g16228_i0 PRJNA800053 16392 256 2.393443 6.12721408 Armatimonadia bacterium 2663015 Bacteria Bacteria 89.7 1.8e-21   NR MEN6549435.1 2663015 g16228 i0 58.3 0.84375 72 30 84.4 0 28 243 1 72 MEN6549435.1 hypothetical protein [Armatimonadia bacterium] diamond 216 89.7 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
30496563 30496563 PRJNA800053_P_NODE_21613_length_244_cov_1.368421_g21449_i0 PRJNA800053 21613 244 1.368421 3.33894724 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 91.3 3.11e-19   NR MEQ1932815.1 2682144 g21449 i0 60 3.78688524590164 80 29 98.4 1 242 3 255 331 MEQ1932815.1 choice-of-anchor D domain-containing protein [Fimbriimonadaceae bacterium] diamond 924 91.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;