RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA800053" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA800053 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5899697 5899697 PRJNA800053_P_NODE_14345_length_270_cov_1.258883_g14181_i0 PRJNA800053 14345 270 1.258883 3.3989841 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 339 1.7e-88   NTclustered gi|820695469|tpe|LN714488.1| 572307 g14181 i0 89.591 20.6962962962963 269 25 99 3 4 270 300754 300487 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 5588 339 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
29526214 29526214 PRJNA800053_P_NODE_15250_length_263_cov_5.926316_g15086_i0 PRJNA800053 15250 263 5.926316 15.58621108 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 69.3 2.99e-13   NR ETW38010.1 1036725 g15086 i0 52.2 2.33840304182509 67 32 76.4 0 261 61 2 68 ETW38010.1 hypothetical protein PFTANZ_01288 [Plasmodium falciparum Tanzania (2000708)] diamond 615 69.7 0.994261119081779 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
29611601 29611601 PRJNA800053_P_NODE_13950_length_273_cov_1.230000_g13786_i0 PRJNA800053 13950 273 1.23 3.3579 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 56.6 6.35e-7   NR KAF7458391.1 83540 g13786 i0 69.7 0.758241758241758 33 10 36.3 0 234 136 157 189 KAF7458391.1 ZPR1 zinc-finger domain protein [Cryptosporidium felis] diamond 207 56.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;