RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA800053", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26800821 26800821 PRJNA800053_P_NODE_23741_length_241_cov_0.916667_g23577_i0 PRJNA800053 23741 241 0.916667 2.20916747 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 69.7 1.68e-12   NR MFA7162346.1 2517205 g23577 i0 48.2 0.697095435684647 56 29 69.7 0 225 58 77 132 MFA7162346.1 uracil-DNA glycosylase [Candidatus Methanomethylophilaceae archaeon] diamond 168 69.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
27906649 27906649 PRJNA800053_P_NODE_11665_length_290_cov_1.354839_g11501_i0 PRJNA800053 11665 290 1.354839 3.9290331 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 64.7 7.25e-10   NR MFA7162454.1 2517205 g11501 i0 54.7 0.662068965517241 64 23 66.2 2 201 10 1 58 MFA7162454.1 AAA family ATPase [Candidatus Methanomethylophilaceae archaeon] diamond 192 64.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
29012332 29012332 PRJNA800053_P_NODE_13348_length_277_cov_1.480392_g13184_i0 PRJNA800053 13348 277 1.480392 4.10068584 Candidatus Poseidoniales archaeon 2163009 Archaea Archaea 69.7 7.49e-12   NR MEK9694431.1 2163009 g13184 i0 48.9 0.996389891696751 92 41 96.4 2 9 275 169 257 MEK9694431.1 hypothetical protein [Candidatus Poseidoniales archaeon] diamond 276 69.7 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;