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contig_metadata

31 rows where bioproject = "PRJNA800053" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 31 ✖

bioproject 1

  • PRJNA800053 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
796257 796257 PRJNA800053_P_NODE_8521_length_328_cov_1.450980_g8357_i0 PRJNA800053 8521 328 1.45098 4.7592144 Desmochloris halophila 138176 Plants Plants 562 1.15e-155   NTclustered gi|371782123|emb|HE610155.1| 138176 g8357 i0 99.674 113.954268292683 307 1 94 0 22 328 2297 2603 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 37377 562 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
1219892 1219892 PRJNA800053_P_NODE_8941_length_321_cov_3.943548_g8777_i0 PRJNA800053 8941 321 3.943548 12.65878908 Hydrodictyaceae 3103 Plants Plants 496 1.16e-135   NTclustered gi|21040380|gb|AF183479.2| 3105 g8777 i0 99.631 57.2866043613707 271 1 84 0 3 273 3004 3274 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 18389 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
2071951 2071951 PRJNA800053_P_NODE_14982_length_265_cov_2.359375_g14818_i0 PRJNA800053 14982 265 2.359375 6.25234375 Pseudopediastrum boryanum 55410 Plants Plants 484 2.0199999999999998e-132   NTclustered gi|2591541213|emb|OY744514.1| 55410 g14818 i0 99.624 124.807547169811 266 0 100 1 1 265 73804 73539 Pseudopediastrum boryanum genome assembly, organelle: plastid:chloroplast blastn 33074 484 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pseudopediastrum Pseudopediastrum boryanum
2071977 2071977 PRJNA800053_P_NODE_1862_length_616_cov_1.169429_g1707_i0 PRJNA800053 1862 616 1.169429 7.20368264 Desmochloris halophila 138176 Plants Plants 1085 0   NTclustered gi|371782123|emb|HE610155.1| 138176 g1707 i0 98.534 126.626623376623 614 9 99 0 3 616 1687 2300 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 78002 1085 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
2072049 2072049 PRJNA800053_P_NODE_4682_length_416_cov_5.848397_g4519_i0 PRJNA800053 4682 416 5.848397 24.32933152 Desmochloris halophila 138176 Plants Plants 758 0   NTclustered gi|371782086|emb|HE610118.1| 138176 g4519 i0 99.758 99.5480769230769 414 0 99 1 4 416 2165 2578 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 41412 758 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
3771635 3771635 PRJNA800053_P_NODE_9363_length_315_cov_9.557851_g9199_i0 PRJNA800053 9363 315 9.557851 30.10723065 Hydrodictyaceae 3103 Plants Plants 577 3.9299999999999986e-160   NTclustered gi|132424525|gb|EF078469.1| 3105 g9199 i0 100 99.0476190476191 312 0 99 0 1 312 1742 1431 Pediastrum duplex strain SL0404MN 26S large subunit ribosomal RNA gene, partial sequence blastn 31200 577 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
4624707 4624707 PRJNA800053_P_NODE_7084_length_353_cov_1.907143_g6920_i0 PRJNA800053 7084 353 1.907143 6.73221479 Pseudopediastrum boryanum 55410 Plants Plants 610 4.39e-170   NTclustered gi|2591541213|emb|OY744514.1| 55410 g6920 i0 98.011 119.101983002833 352 6 99 1 1 351 68996 69347 Pseudopediastrum boryanum genome assembly, organelle: plastid:chloroplast blastn 42043 610 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pseudopediastrum Pseudopediastrum boryanum
7174453 7174453 PRJNA800053_P_NODE_10066_length_307_cov_1.427350_g9902_i0 PRJNA800053 10066 307 1.42735 4.3819645 Pediastrum duplex 3105 Plants Plants 516 8.45e-142   NTclustered gi|1197510150|ref|NC_034654.1| 3105 g9902 i0 97.36 121.638436482085 303 8 99 0 2 304 100683 100381 Pediastrum duplex voucher EL0201CT chloroplast, complete genome blastn 37343 516 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
7174579 7174579 PRJNA800053_P_NODE_24886_length_227_cov_2.136364_g24722_i0 PRJNA800053 24886 227 2.136364 4.84954628 Corbierea radiosa 51318 Plants Plants 361 2.96e-95   NTclustered gi|18654306|gb|L42987.1|RTCCPRGOLB 51318 g24722 i0 98.077 114.374449339207 208 3 91 1 4 210 59 266 Carteria radiosa large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product blastn 25963 361 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Corbierea Corbierea radiosa
7174585 7174585 PRJNA800053_P_NODE_25306_length_200_cov_4.763780_g25142_i0 PRJNA800053 25306 200 4.76378 9.52756 Corbierea radiosa 51318 Plants Plants 364 1.96e-96   NTclustered gi|18654306|gb|L42987.1|RTCCPRGOLB 51318 g25142 i0 100 134.945 197 0 99 0 4 200 791 987 Carteria radiosa large subunit ribosomal RNA gene, complete sequence; chloroplast gene for chloroplast product blastn 26989 364 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Corbierea Corbierea radiosa
7174608 7174608 PRJNA800053_P_NODE_7066_length_353_cov_4.150000_g6902_i0 PRJNA800053 7066 353 4.15 14.6495 Auxenochlorella sp. I-7 1973322 Plants Plants 647 0   NTclustered gi|1173100219|gb|KY363484.1| 1973322 g6902 i0 100 99.2974504249292 350 0 99 0 4 353 10 359 Auxenochlorella sp. I-7 26S ribosomal RNA gene, partial sequence blastn 35052 647 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella sp. I-7
7598026 7598026 PRJNA800053_P_NODE_25246_length_203_cov_8.323077_g25082_i0 PRJNA800053 25246 203 8.323077 16.89584631 Hydrodictyaceae 3103 Plants Plants 355 1.2e-93   NTclustered gi|21040380|gb|AF183479.2| 3105 g25082 i0 98.99 104.733990147783 198 2 98 0 4 201 2331 2528 Pediastrum duplex strain UTEX LB 1364 28S ribosomal RNA gene, partial sequence blastn 21261 355 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
9724356 9724356 PRJNA800053_P_NODE_24408_length_235_cov_2.308642_g24244_i0 PRJNA800053 24408 235 2.308642 5.4253087 Chlamydomonas noctigama 28456 Plants Plants 392 1.0899999999999999e-104   NTclustered gi|6120000|gb|AF183460.1| 28456 g24244 i0 97.797 96.5489361702128 227 5 97 0 4 230 1594 1820 Chlamydomonas noctigama culture SAG:33.72 strain SAG 33.72 28S ribosomal RNA gene, partial sequence blastn 22689 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas noctigama
10148379 10148379 PRJNA800053_P_NODE_13308_length_277_cov_1.975490_g13144_i0 PRJNA800053 13308 277 1.97549 5.4721073 Chlorophyta 3041 Plants Plants 490 4.56e-134   NTclustered gi|5326955|emb|AJ242762.1| 3078 g13144 i0 98.905 98.927797833935 274 3 99 0 1 274 350 77 Chlorella pyrenoidosa 18S rRNA gene, partial, strain IAM C-101 blastn 27403 492 0.995934959349594 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
10148381 10148381 PRJNA800053_P_NODE_14068_length_272_cov_1.326633_g13904_i0 PRJNA800053 14068 272 1.326633 3.60844176 Chlorellaceae 35461 Plants Plants 477 3.4699999999999986e-130   NTclustered gi|1189396800|gb|MF040300.1| 3075 g13904 i0 98.519 81.2169117647059 270 4 99 0 1 270 605 874 Auxenochlorella protothecoides isolate MM0011 small subunit ribosomal RNA gene, partial sequence blastn 22091 477 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
11000158 11000158 PRJNA800053_P_NODE_5389_length_394_cov_1.482866_g5226_i0 PRJNA800053 5389 394 1.482866 5.84249204 Chloromonas sp. Gassan-B 1580878 Plants Plants 84.2 1.34e-11   NTclustered gi|930854964|dbj|LC060478.1| 1580878 g5226 i0 72.381 11.8654822335025 315 69 77 16 5 309 1764 1458 Chloromonas sp. Gassan-B gene for 26S ribosomal RNA, partial sequence blastn 4675 84.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas sp. Gassan-B
15248143 15248143 PRJNA800053_P_NODE_25092_length_214_cov_13.524823_g24928_i0 PRJNA800053 25092 214 13.524823 28.94312122 Scenedesmaceae 3086 Plants Plants 390 3.519999999999999e-104   NTclustered gi|1398977916|gb|MH459062.1| 77546 g24928 i0 100 98.5981308411215 211 0 99 0 4 214 639 849 Scenedesmus vacuolatus strain NG small subunit ribosomal RNA gene, partial sequence blastn 21100 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus vacuolatus
16098702 16098702 PRJNA800053_P_NODE_15653_length_261_cov_1.500000_g15489_i0 PRJNA800053 15653 261 1.5 3.915 Pseudopediastrum boryanum 55410 Plants Plants 475 1.1899999999999999e-129   NTclustered gi|1388162763|gb|MF276983.1| 55410 g15489 i0 100 137.701149425287 257 0 98 0 4 260 95429 95685 Pseudopediastrum boryanum chloroplast, complete genome blastn 35940 475 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pseudopediastrum Pseudopediastrum boryanum
16522737 16522737 PRJNA800053_P_NODE_25373_length_196_cov_7.333333_g25209_i0 PRJNA800053 25373 196 7.333333 14.37333268 Hydrodictyaceae 3103 Plants Plants 357 3.2099999999999996e-94   NTclustered gi|1914023924|gb|MW075316.1| 3105 g25209 i0 100 98.1785714285714 193 0 98 0 4 196 659 851 Pediastrum duplex strain SAG 261-3a small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19243 359 0.994428969359331 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Pediastrum Pediastrum duplex
17797507 17797507 PRJNA800053_P_NODE_5374_length_394_cov_5.757009_g5211_i0 PRJNA800053 5374 394 5.757009 22.68261546 Desmochloris 138596 Plants Plants 691 0   NTclustered gi|1100849372|gb|KY086483.1| 1915387 g5211 i0 98.473 99.7055837563452 393 4 99 1 1 391 980 588 Desmochloris sp. ACSSI 180 small subunit ribosomal RNA gene, partial sequence blastn 39284 691 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris sp. ACSSI 180
22473253 22473253 PRJNA800053_P_NODE_11518_length_291_cov_1.752294_g11354_i0 PRJNA800053 11518 291 1.752294 5.09917554 Pseudochlorella signiensis 173497 Plants Plants 411 3.8599999999999997e-110   NTclustered gi|725650714|ref|NC_025529.1| 173497 g11354 i0 95.019 122.707903780069 261 13 90 0 4 264 150009 150269 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 35708 411 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
22473257 22473257 PRJNA800053_P_NODE_11778_length_289_cov_1.388889_g11614_i0 PRJNA800053 11778 289 1.388889 4.01388921 Auxenochlorella protothecoides 3075 Plants Plants 370 6.5e-98   NTclustered gi|760442440|ref|XM_011399987.1| 3075 g11614 i0 99.507 0.927335640138408 203 1 70 0 84 286 236 34 Auxenochlorella protothecoides putative RNA-binding protein partial mRNA blastn 268 370 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
22473294 22473294 PRJNA800053_P_NODE_15898_length_259_cov_4.397849_g15734_i0 PRJNA800053 15898 259 4.397849 11.39042891 Ulva intestinalis 3116 Plants Plants 412 9.39e-111   NTclustered gi|2064311657|gb|MZ158703.1| 3116 g15734 i0 95.703 104.081081081081 256 11 99 0 1 256 66876 67131 Ulva intestinalis isolate CNS00531 chloroplast, complete genome blastn 26957 412 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva intestinalis
22473378 22473378 PRJNA800053_P_NODE_24658_length_231_cov_2.215190_g24494_i0 PRJNA800053 24658 231 2.21519 5.1170889 Auxenochlorella protothecoides 3075 Plants Plants 418 1.7699999999999994e-112   NTclustered gi|570364818|gb|KC843975.1| 3075 g24494 i0 99.563 123.601731601732 229 1 99 0 3 231 37692 37464 Auxenochlorella protothecoides chloroplast, complete genome blastn 28552 418 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
23748850 23748850 PRJNA800053_P_NODE_12619_length_282_cov_1.913876_g12455_i0 PRJNA800053 12619 282 1.913876 5.39713032 Desmochloris halophila 138176 Plants Plants 414 2.88e-111   NTclustered gi|371782123|emb|HE610155.1| 138176 g12455 i0 96.787 100.425531914894 249 6 88 1 4 250 1479 1727 Desmochloris halophila plastid 16S rRNA gene (partial), 23S rRNA gene (partial) and ITS1, strain UTEX 2073 blastn 28320 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
24171495 24171495 PRJNA800053_P_NODE_14539_length_268_cov_2.774359_g14375_i0 PRJNA800053 14539 268 2.774359 7.43528212 Selenastraceae 35466 Plants Plants 435 2.09e-117   NTclustered gi|2445342045|gb|OP765320.1| 34112 g14375 i0 97.287 147.514925373134 258 4 95 1 3 257 55199 55456 Chlorolobion braunii chloroplast, complete genome blastn 39534 435 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Chlorolobion Chlorolobion braunii
25022863 25022863 PRJNA800053_P_NODE_25140_length_211_cov_4.398551_g24976_i0 PRJNA800053 25140 211 4.398551 9.28094261 Desmochloris halophila 138176 Plants Plants 385 1.61e-102   NTclustered gi|371782086|emb|HE610118.1| 138176 g24976 i0 100 98.9194312796209 208 0 99 0 3 210 2790 2583 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 20872 385 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
25446560 25446560 PRJNA800053_P_NODE_9160_length_318_cov_2.677551_g8996_i0 PRJNA800053 9160 318 2.677551 8.51461218 Desmodesmus 91202 Plants Plants 566 8.609999999999999e-157   NTclustered gi|2278077277|gb|OP103755.1| 77547 g8996 i0 99.048 97.5314465408805 315 3 99 0 4 318 2404 2718 Desmodesmus abundans strain FBCC-A1277 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31015 571 0.991243432574431 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
28190877 28190877 PRJNA800053_P_NODE_23686_length_241_cov_0.916667_g23522_i0 PRJNA800053 23686 241 0.916667 2.20916747 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 72 1.53e-12   NR KAF6252184.1 2650976 g23522 i0 47.8 5.47717842323651 90 36 98.3 1 238 2 289 378 KAF6252184.1 mitochondrial carrier domain-containing protein [Scenedesmus sp. NREL 46B-D3] diamond 1320 72 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
28294688 28294688 PRJNA800053_P_NODE_23946_length_241_cov_0.916667_g23782_i0 PRJNA800053 23946 241 0.916667 2.20916747 Chlorophyta 3041 Plants Plants 107 6.77e-25   NR KAK9810134.1 41462 g23782 i0 64.6 9.83402489626556 79 28 98.3 0 3 239 333 411 KAK9810134.1 hypothetical protein WJX72_005428 [[Myrmecia] bisecta] diamond 2370 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
31033840 31033840 PRJNA800053_P_NODE_20515_length_246_cov_0.890173_g20351_i0 PRJNA800053 20515 246 0.890173 2.18982558 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 51.6 2.87e-5   NR KAF6251104.1 2650976 g20351 i0 62.2 0.451219512195122 37 14 45.1 0 163 53 196 232 KAF6251104.1 hypothetical protein COO60DRAFT_672416 [Scenedesmus sp. NREL 46B-D3] diamond 111 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;