contig_metadata
8 rows where bioproject = "PRJNA800053", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14824575 | 14824575 | PRJNA800053_P_NODE_16792_length_254_cov_1.436464_g16628_i0 | PRJNA800053 | 16792 | 254 | 1.436464 | 3.64861856 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 388 | 1.5499999999999998e-103 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g16628 | i0 | 98.198 | 138.157480314961 | 222 | 4 | 87 | 0 | 4 | 225 | 421773 | 421994 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 35092 | 388 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 18647757 | 18647757 | PRJNA800053_P_NODE_8655_length_326_cov_1.434783_g8491_i0 | PRJNA800053 | 8655 | 326 | 1.434783 | 4.67739258 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 320 | 7.61e-83 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g8491 | i0 | 84.923 | 66.4355828220859 | 325 | 39 | 98 | 9 | 4 | 322 | 3042327 | 3042647 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 21658 | 320 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 19923005 | 19923005 | PRJNA800053_P_NODE_1836_length_619_cov_1.703297_g1682_i0 | PRJNA800053 | 1836 | 619 | 1.703297 | 10.54340843 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 470 | 1.43e-127 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g1682 | i0 | 85.683 | 78.9386106623586 | 461 | 49 | 98 | 15 | 3 | 456 | 420876 | 421326 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 48863 | 470 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 27843599 | 27843599 | PRJNA800053_P_NODE_24864_length_227_cov_2.792208_g24700_i0 | PRJNA800053 | 24864 | 227 | 2.792208 | 6.33831216 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 62.4 | 3e-9 | NR | GIT52433.1 | 2026742 | g24700 | i0 | 54.5 | 0.726872246696035 | 55 | 25 | 72.7 | 0 | 59 | 223 | 1 | 55 | GIT52433.1 MAG: hypothetical protein Ct9H300mP15_26460 [Gemmatimonadota bacterium] | diamond | 165 | 62.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 28917058 | 28917058 | PRJNA800053_P_NODE_22368_length_243_cov_0.905882_g22204_i0 | PRJNA800053 | 22368 | 243 | 0.905882 | 2.20129326 | Gemmatirosa sp. | 2510638 | Bacteria | Bacteria | 65.5 | 1.25e-10 | NR | HZF67357.1 | 2510638 | g22204 | i0 | 68.8 | 0.592592592592593 | 48 | 11 | 54.3 | 1 | 243 | 112 | 174 | 221 | HZF67357.1 transcriptional repressor LexA [Gemmatirosa sp.] | diamond | 144 | 65.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa sp. | |
| 29012334 | 29012334 | PRJNA800053_P_NODE_18508_length_249_cov_1.329545_g18344_i0 | PRJNA800053 | 18508 | 249 | 1.329545 | 3.31056705 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 125 | 1.11e-32 | NR | MBK8249223.1 | 2026742 | g18344 | i0 | 75.3 | 0.975903614457831 | 81 | 20 | 97.6 | 0 | 244 | 2 | 7 | 87 | MBK8249223.1 D-glycerate dehydrogenase [Gemmatimonadota bacterium] | diamond | 243 | 125 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 31263740 | 31263740 | PRJNA800053_P_NODE_21415_length_245_cov_0.895349_g21251_i0 | PRJNA800053 | 21415 | 245 | 0.895349 | 2.19360505 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 115 | 8.16e-28 | NR | MCC6244825.1 | 2026741 | g21251 | i0 | 70.9 | 1.9469387755102 | 79 | 23 | 96.7 | 0 | 244 | 8 | 367 | 445 | MCC6244825.1 response regulator [Gemmatimonadaceae bacterium] | diamond | 477 | 115 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 32907047 | 32907047 | PRJNA800053_P_NODE_12060_length_287_cov_1.126168_g11896_i0 | PRJNA800053 | 12060 | 287 | 1.126168 | 3.23210216 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 95.5 | 3.96e-22 | NR | WP_291163363.1 | 1946568 | g11896 | i0 | 55.3 | 4.39024390243902 | 85 | 35 | 88.9 | 1 | 270 | 16 | 113 | 194 | WP_291163363.1 hypothetical protein [Gemmatimonas sp. UBA7669] | diamond | 1260 | 96.3 | 0.991692627206646 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas sp. UBA7669 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;