RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA800053", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA800053 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27243689 27243689 PRJNA800053_P_NODE_21463_length_245_cov_0.895349_g21299_i0 PRJNA800053 21463 245 0.895349 2.19360505 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 102 2.789999999999999e-23   NR MEA2701730.1 2762014 g21299 i0 70.3 0.906122448979592 74 22 90.6 0 242 21 111 184 MEA2701730.1 segregation ATPase FtsK/SpoIIIE, family [Candidatus Parcubacteria bacterium] diamond 222 102 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31254717 31254717 PRJNA800053_P_NODE_8535_length_328_cov_1.200000_g8371_i0 PRJNA800053 8535 328 1.2 3.936 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 102 1.51e-24   NR RMD61373.1 2762014 g8371 i0 62.9 0.814024390243902 89 32 81.4 1 269 3 1 88 RMD61373.1 MAG: hypothetical protein D6833_08350 [Candidatus Parcubacteria bacterium] diamond 267 102 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31729124 31729124 PRJNA800053_P_NODE_13837_length_274_cov_1.109453_g13673_i0 PRJNA800053 13837 274 1.109453 3.03990122 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 125 5.14e-31   NR MFM2383805.1 2762014 g13673 i0 66.3 1.00729927007299 92 27 96.4 1 5 268 372 463 MFM2383805.1 ATP-dependent helicase RecG, ATP-dependent helicase RecG [Candidatus Parcubacteria bacterium] diamond 276 125 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;