RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA799842", tax_phylum = "Thermoplasmatota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

  • Thermoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA799842 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19920898 19920898 PRJNA799842_P_NODE_174436_length_244_cov_0.900585_g172863_i0 PRJNA799842 174436 244 0.900585 2.1974274 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 141 1.1199999999999999e-38   NR MDD1743122.1 1906667 g172863 i0 88.8 0.983606557377049 80 9 98.4 0 242 3 239 318 MDD1743122.1 acetyl-CoA decarbonylase/synthase complex subunit gamma [Methanomassiliicoccales archaeon] diamond 240 141 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
27085687 27085687 PRJNA799842_P_NODE_141902_length_250_cov_0.870056_g140329_i0 PRJNA799842 141902 250 0.870056 2.17514 Thermoplasmata archaeon 1906666 Archaea Archaea 42.7 0.0404   NR HLM70304.1 1906666 g140329 i0 77.3 0.264 22 5 26.4 0 2 67 474 495 HLM70304.1 molybdopterin-synthase adenylyltransferase MoeB [Thermoplasmata archaeon] diamond 66 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
27686232 27686232 PRJNA799842_P_NODE_75844_length_330_cov_1.112840_g74271_i0 PRJNA799842 75844 330 1.11284 3.672372 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 110 1.28e-25   NR MDP6378206.1 2670411 g74271 i0 63.4 2.96363636363636 82 30 74.5 0 80 325 192 273 MDP6378206.1 CTP synthase (glutamine hydrolyzing) [Candidatus Thalassarchaeaceae archaeon] diamond 978 110 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon
28484252 28484252 PRJNA799842_P_NODE_166346_length_245_cov_0.895349_g164773_i0 PRJNA799842 166346 245 0.895349 2.19360505 Candidatus Pacearchaeota 1801617 Archaea Archaea 57 1.68e-7   NR RLF68161.1 1906666 g164773 i0 38.8 1.98367346938776 80 49 98 0 242 3 47 126 RLF68161.1 MAG: hypothetical protein DRN26_00395 [Thermoplasmata archaeon] diamond 486 57 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30694876 30694876 PRJNA799842_P_NODE_140633_length_250_cov_0.870056_g139060_i0 PRJNA799842 140633 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 140 9.65e-39   NR HIH98551.1 1906666 g139060 i0 77.1 3.984 83 19 99.6 0 249 1 93 175 HIH98551.1 hypothetical protein [Thermoplasmata archaeon] diamond 996 141 0.99290780141844 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;