RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA799842" and tax_phylum = "Candidatus Collieribacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30465137 30465137 PRJNA799842_P_NODE_147893_length_249_cov_0.875000_g146320_i0 PRJNA799842 147893 249 0.875 2.17875 Candidatus Collierbacteria bacterium GW2 2053540 Bacteria Bacteria 145 2.29e-39   NR KKU29590.1 1618399 g146320 i0 86.6 1.97590361445783 82 11 98.8 0 248 3 205 286 KKU29590.1 MAG: RelA/SpoT family protein [Candidatus Collierbacteria bacterium GW2011_GWE1_46_18] diamond 492 145 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWE1_46_18
30758184 30758184 PRJNA799842_P_NODE_147194_length_249_cov_0.875000_g145621_i0 PRJNA799842 147194 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 102 2.77e-24   NR KKU33358.1 1618381 g145621 i0 55.4 2 83 37 100 0 249 1 94 176 KKU33358.1 MAG: hypothetical protein UX47_C0004G0003 [Candidatus Collierbacteria bacterium GW2011_GWA2_46_26] diamond 498 102 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWA2_46_26
32371091 32371091 PRJNA799842_P_NODE_189619_length_241_cov_0.916667_g188046_i0 PRJNA799842 189619 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 115 3.84e-29   NR KKT40063.1 1618391 g188046 i0 76.6 1.91701244813278 77 18 95.9 0 6 236 55 131 KKT40063.1 MAG: hypothetical protein UW29_C0006G0058 [Candidatus Collierbacteria bacterium GW2011_GWC2_44_13] diamond 462 115 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWC2_44_13

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;