RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA799842" and tax_phylum = "Candidatus Berkelbacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Berkelbacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30117079 30117079 PRJNA799842_P_NODE_166532_length_245_cov_0.895349_g164959_i0 PRJNA799842 166532 245 0.895349 2.19360505 Candidatus Berkelbacteria bacterium 2053521 Bacteria Bacteria 116 9.2e-29   NR MCR4307117.1 2053521 g164959 i0 72.7 0.942857142857143 77 21 94.3 0 10 240 347 423 MCR4307117.1 hypothetical protein [Candidatus Berkelbacteria bacterium] diamond 231 116 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium
30180302 30180302 PRJNA799842_P_NODE_145972_length_249_cov_0.875000_g144399_i0 PRJNA799842 145972 249 0.875 2.17875 Candidatus Berkelbacteria bacterium CG23_combo_of_CG 2053521 Bacteria Bacteria 90.5 1.28e-19   NR PIP51420.1 1974518 g144399 i0 53.7 0.987951807228916 82 36 98.8 1 247 2 66 145 PIP51420.1 MAG: polysaccharide deacetylase [Candidatus Berkelbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_33_15] diamond 246 90.5 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_33_15
31168633 31168633 PRJNA799842_P_NODE_168335_length_245_cov_0.895349_g166762_i0 PRJNA799842 168335 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 54.3 3.04e-6   NR OGD67113.1 1797469 g166762 i0 48.7 0.930612244897959 39 20 47.8 0 4 120 315 353 OGD67113.1 MAG: hypothetical protein A3F08_00960 [Candidatus Berkelbacteria bacterium RIFCSPHIGHO2_12_FULL_36_9] diamond 228 54.3 1 Bacteria Bacteria candidate phyla   Candidatus Berkelbacteria         Candidatus Berkelbacteria bacterium RIFCSPHIGHO2_12_FULL_36_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;