RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA799842" and tax_phylum = "Candidatus Amesiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Amesiibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29999965 29999965 PRJNA799842_P_NODE_167111_length_245_cov_0.895349_g165538_i0 PRJNA799842 167111 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 144 6.13e-38   NR KKU97388.1 1618362 g165538 i0 91 2.86530612244898 78 7 95.5 0 242 9 510 587 KKU97388.1 MAG: hypothetical protein UY28_C0022G0003 [Candidatus Amesbacteria bacterium GW2011_GWB1_48_13] diamond 702 144 1 Bacteria Bacteria candidate phyla   Candidatus Amesiibacteriota         Candidatus Amesbacteria bacterium GW2011_GWB1_48_13
31823880 31823880 PRJNA799842_P_NODE_155737_length_247_cov_0.885057_g154164_i0 PRJNA799842 155737 247 0.885057 2.18609079 Candidatus Amesbacteria bacterium RIFCSPHIGHO2_ 1932011 Bacteria Bacteria 138 9.84e-36   NR OGC99551.1 1797251 g154164 i0 80.7 1.0080971659919 83 15 99.6 1 2 247 572 654 OGC99551.1 MAG: valine--tRNA ligase [Candidatus Amesbacteria bacterium RIFCSPHIGHO2_01_FULL_47_34] diamond 249 138 1 Bacteria Bacteria candidate phyla   Candidatus Amesiibacteriota         Candidatus Amesbacteria bacterium RIFCSPHIGHO2_01_FULL_47_34
32781028 32781028 PRJNA799842_P_NODE_166020_length_245_cov_0.895349_g164447_i0 PRJNA799842 166020 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 128 1.09e-33   NR KKU65033.1 1618353 g164447 i0 77.8 4.8734693877551 81 18 99.2 0 2 244 259 339 KKU65033.1 MAG: Transcription termination factor NusA [Candidatus Amesbacteria bacterium GW2011_GWA1_47_16] diamond 1194 129 0.992248062015504 Bacteria Bacteria candidate phyla   Candidatus Amesiibacteriota         Candidatus Amesbacteria bacterium GW2011_GWA1_47_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;