RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where bioproject = "PRJNA799842" and tax_kingdom = "Pararnavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 25 ✖

bioproject 1

  • PRJNA799842 · 25 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
794863 794863 PRJNA799842_P_NODE_41181_length_445_cov_1.005376_g39610_i0 PRJNA799842 41181 445 1.005376 4.4739232 Caulimovirus sp. 2692413 Viruses Viruses 580 4.439999999999999e-161   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g39610 i0 90.293 1.19101123595506 443 43 99 0 3 445 3238 3680 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 530 580 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
2071221 2071221 PRJNA799842_P_NODE_68442_length_345_cov_1.474265_g66869_i0 PRJNA799842 68442 345 1.474265 5.08621425 Caulimovirus sp. 2692413 Viruses Viruses 222 2.35e-53   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g66869 i0 89.266 0.51304347826087 177 19 51 0 169 345 5771 5595 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 177 222 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
4624299 4624299 PRJNA799842_P_NODE_87324_length_310_cov_1.126582_g85751_i0 PRJNA799842 87324 310 1.126582 3.4924042 Sweet potato badnavirus B 647294 Viruses Viruses 573 4.999999999999998e-159   NTclustered gi|1633425080|gb|MK052981.1| 647294 g85751 i0 100 5.01612903225806 310 0 100 0 1 310 151 460 Sweet potato badnavirus B isolate Hunan-184, complete genome blastn 1555 573 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Sweet potato badnavirus B
4624413 4624413 PRJNA799842_P_NODE_92644_length_301_cov_1.899123_g91071_i0 PRJNA799842 92644 301 1.899123 5.71636023 Caulimovirus venafragariae 3048344 Viruses Viruses 342 1.4799999999999999e-89   NTclustered gi|1939126356|gb|MT036055.1| 47903 g91071 i0 100 38.8936877076412 185 0 100 0 117 301 5515 5699 Strawberry vein banding virus strain BJHXC1, complete genome blastn 11707 342 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus venafragariae
7171040 7171040 PRJNA799842_P_NODE_101186_length_289_cov_1.425926_g99613_i0 PRJNA799842 101186 289 1.425926 4.12092614 Sweet potato badnavirus B 647294 Viruses Viruses 368 2.34e-97   NTclustered gi|238563974|ref|NC_012728.1| 647294 g99613 i0 90.391 6.33910034602076 281 25 97 2 1 280 914 635 Sweetpotato badnavirus B, complete genome blastn 1832 368 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Sweet potato badnavirus B
7171178 7171178 PRJNA799842_P_NODE_108746_length_280_cov_2.275362_g107173_i0 PRJNA799842 108746 280 2.275362 6.3710136 Caulimovirus sp. 2692413 Viruses Viruses 427 3.67e-115   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g107173 i0 94.265 1.43928571428571 279 16 99 0 1 279 5602 5324 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 403 427 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
8447928 8447928 PRJNA799842_P_NODE_4007_length_1491_cov_1.561354_g3375_i0 PRJNA799842 4007 1491 1.561354 23.27978814 Caulimovirus sp. 2692413 Viruses Viruses 1729 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g3375 i0 91.734 1.02682763246144 1246 102 84 1 247 1491 1809 3054 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 1531 1729 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
9722749 9722749 PRJNA799842_P_NODE_308_length_3297_cov_3.903846_g216_i0 PRJNA799842 308 3297 3.903846 128.70980262 RD114 retrovirus 11834 Viruses Viruses 6071 0   NTclustered gi|306482054|dbj|AB559882.1| 11834 g216 i0 99.909 47.0931149529876 3296 3 99 0 2 3297 8149 4854 RD114 retrovirus proviral DNA, complete genome, strain: CRT1 blastn 155266 6071 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus RD114 retrovirus
10997152 10997152 PRJNA799842_P_NODE_12709_length_876_cov_3.012453_g11425_i0 PRJNA799842 12709 876 3.012453 26.38908828 Caulimovirus sp. 2692413 Viruses Viruses 1151 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g11425 i0 90.503 1.08904109589041 874 80 99 2 1 871 3680 2807 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 954 1151 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
10998448 10998448 PRJNA799842_P_NODE_26429_length_572_cov_0.931864_g24876_i0 PRJNA799842 26429 572 0.931864 5.33026208 Caulimovirus sp. 2692413 Viruses Viruses 676 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g24876 i0 88.669 0.972027972027972 556 62 97 1 18 572 4900 5455 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 556 676 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
13546786 13546786 PRJNA799842_P_NODE_12711_length_876_cov_2.623910_g11425_i1 PRJNA799842 12711 876 2.62391 22.9854516 Caulimovirus sp. 2692413 Viruses Viruses 1173 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g11425 i1 90.961 1.08904109589041 874 76 99 2 6 876 2807 3680 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 954 1173 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
14824441 14824441 PRJNA799842_P_NODE_98632_length_293_cov_0.936364_g97059_i0 PRJNA799842 98632 293 0.936364 2.74354652 Caulimovirus sp. 2692413 Viruses Viruses 348 3.09e-91   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g97059 i0 88.055 1 293 35 100 0 1 293 3733 3441 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 293 348 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
16096197 16096197 PRJNA799842_P_NODE_153313_length_248_cov_0.880000_g151740_i0 PRJNA799842 153313 248 0.88 2.1824 Caulimovirus sp. 2692413 Viruses Viruses 213 9.72e-51   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g151740 i0 87.766 0.758064516129032 188 16 74 7 1 183 5970 5785 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 188 213 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
17371757 17371757 PRJNA799842_P_NODE_134914_length_251_cov_0.887640_g133341_i0 PRJNA799842 134914 251 0.88764 2.2279764 Caulimovirus sp. 2692413 Viruses Viruses 209 1.28e-49   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g133341 i0 85.024 0.824701195219124 207 29 82 2 46 251 5784 5989 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 207 209 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
17373879 17373879 PRJNA799842_P_NODE_6974_length_1179_cov_1.745931_g6064_i0 PRJNA799842 6974 1179 1.745931 20.58452649 Caulimovirus sp. 2692413 Viruses Viruses 1565 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g6064 i0 91.882 0.950805767599661 1121 89 95 2 1 1120 5962 7081 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 1121 1565 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
18647253 18647253 PRJNA799842_P_NODE_835_length_2485_cov_2.232587_g635_i0 PRJNA799842 835 2485 2.232587 55.47978695 Caulimovirus sp. 2692413 Viruses Viruses 3326 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g635 i0 90.891 1.01167002012072 2514 178 100 18 1 2485 2494 3 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 2514 3326 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
21197211 21197211 PRJNA799842_P_NODE_39357_length_456_cov_1.208877_g37786_i0 PRJNA799842 39357 456 1.208877 5.51247912 Caulimovirus sp. 2692413 Viruses Viruses 558 2.14e-154   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g37786 i0 88.791 0.99780701754386 455 51 99 0 2 456 4062 3608 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 455 558 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
22470888 22470888 PRJNA799842_P_NODE_160938_length_246_cov_0.890173_g159365_i0 PRJNA799842 160938 246 0.890173 2.18982558 Badnavirus occultipomeae 3048353 Viruses Viruses 222 1.5999999999999996e-53   NTclustered gi|2429573989|gb|ON055397.1| 2034762 g159365 i0 98.413 3.82113821138211 126 2 51 0 14 139 7523 7648 Sweet potato pakakuy virus isolate SPPV-SP1, complete genome blastn 940 222 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus occultipomeae
22471749 22471749 PRJNA799842_P_NODE_31618_length_515_cov_1.490950_g30053_i0 PRJNA799842 31618 515 1.49095 7.6783925 Caulimovirus venafragariae 3048344 Viruses Viruses 547 5.2799999999999986e-151   NTclustered gi|1939126303|gb|MT027006.1| 47903 g30053 i0 99.338 36.5883495145631 302 2 98 0 214 515 6718 6417 Strawberry vein banding virus strain BJHYZ1, complete genome blastn 18843 547 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus venafragariae
23747852 23747852 PRJNA799842_P_NODE_53059_length_390_cov_0.974763_g51486_i0 PRJNA799842 53059 390 0.974763 3.8015757 Caulimovirus sp. 2692413 Viruses Viruses 368 3.26e-97   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g51486 i0 88.274 0.787179487179487 307 36 79 0 84 390 5790 6096 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 307 368 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
25020024 25020024 PRJNA799842_P_NODE_144680_length_249_cov_1.312500_g143107_i0 PRJNA799842 144680 249 1.3125 3.268125 Caulimovirus sp. 2692413 Viruses Viruses 346 9.229999999999999e-91   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g143107 i0 92 1.00401606425703 250 15 100 4 1 249 3517 3762 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 250 346 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
25021167 25021167 PRJNA799842_P_NODE_2920_length_1668_cov_2.115987_g2410_i0 PRJNA799842 2920 1668 2.115987 35.29466316 Caulimovirus sp. 2692413 Viruses Viruses 2036 0   NTclustered gi|1789142630|gb|MN203146.1| 2692413 g2410 i0 88.823 1.01378896882494 1691 146 100 19 1 1668 3756 5426 Caulimovirus sp. isolate UHEPClV-1.CD-W ORF2 gene, complete cds; and ORF1 gene, partial cds blastn 1691 2036 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.
25022244 25022244 PRJNA799842_P_NODE_77440_length_327_cov_1.102362_g75867_i0 PRJNA799842 77440 327 1.102362 3.60472374 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.031   NTclustered gi|116280694|gb|DQ880113.1| 11676 g75867 i0 100 0.0856269113149847 28 0 9 0 133 160 40 13 HIV-1 isolate 1182.12-2225-20030820 pol protein (pol) gene, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
29896206 29896206 PRJNA799842_P_NODE_80971_length_320_cov_2.040486_g79398_i0 PRJNA799842 80971 320 2.040486 6.5295552 Sweet potato vein clearing virus 995049 Viruses Viruses 48.9 6.15e-4   NR YP_004300274.1 995049 g79398 i0 31.5 1.0125 108 68 96.6 2 313 5 82 188 YP_004300274.1 replicase [Sweet potato vein clearing virus] diamond 324 48.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venaipomeae
31349757 31349757 PRJNA799842_P_NODE_78036_length_326_cov_0.940711_g76463_i0 PRJNA799842 78036 326 0.940711 3.06671786 Caulimovirus sp. 2692413 Viruses Viruses 161 1.97e-43   NR QHB15111.1 2692413 g76463 i0 78 1.00306748466258 109 15 99.4 3 325 2 1354 1454 QHB15111.1 ORF2 [Caulimovirus sp.] diamond 327 161 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;