RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA799842", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA799842 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27054058 27054058 PRJNA799842_P_NODE_120682_length_266_cov_2.393782_g119109_i0 PRJNA799842 120682 266 2.393782 6.36746012 Rozella allomycis CSF55 988480 Fungi Fungi 92 5.86e-20   NR EPZ31697.1 988480 g119109 i0 57.5 3.84586466165414 80 33 89.1 1 237 1 203 282 EPZ31697.1 UPF0103/Mediator of ErbB2-driven cell motility domain-containing protein [Rozella allomycis CSF55] diamond 1023 92 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
27433517 27433517 PRJNA799842_P_NODE_43203_length_433_cov_1.505556_g41631_i0 PRJNA799842 43203 433 1.505556 6.51905748 Rozella allomycis CSF55 988480 Fungi Fungi 47 0.00787   NR EPZ34945.1 988480 g41631 i0 55.3 0.484988452655889 38 17 26.3 0 324 211 23 60 EPZ34945.1 hypothetical protein O9G_001675 [Rozella allomycis CSF55] diamond 210 47 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
31096586 31096586 PRJNA799842_P_NODE_57655_length_374_cov_1.534884_g56082_i0 PRJNA799842 57655 374 1.534884 5.74046616 Rozella allomycis CSF55 988480 Fungi Fungi 85.5 7.03e-17   NR RKP17407.1 988480 g56082 i0 52.8 0.577540106951872 72 34 57.8 0 364 149 263 334 RKP17407.1 TPT-domain-containing protein [Rozella allomycis CSF55] diamond 216 85.5 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;