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contig_metadata

30 rows where bioproject = "PRJNA799842", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 30 ✖

tax_clade 1

  • Sar · 30 ✖

bioproject 1

  • PRJNA799842 · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
793010 793010 PRJNA799842_P_NODE_118561_length_269_cov_1.178571_g116988_i0 PRJNA799842 118561 269 1.178571 3.17035599 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 149 2.54e-39   NR KAJ8574951.1 4785 g116988 i0 80.9 149.877323420074 89 17 99.3 0 2 268 243 331 KAJ8574951.1 hypothetical protein ON010_g4262 [Phytophthora cinnamomi] diamond 40317 150 0.993333333333333 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
4623092 4623092 PRJNA799842_P_NODE_32704_length_505_cov_3.731481_g31138_i0 PRJNA799842 32704 505 3.731481 18.84397905 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 210 1.46e-66   NR CCA19404.1 890382 g31138 i0 72.5 6.01782178217822 142 38 84.4 1 483 58 6 146 CCA19404.1 40S ribosomal protein S11 putative [Albugo laibachii Nc14] diamond 3039 210 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7596790 7596790 PRJNA799842_P_NODE_125966_length_260_cov_1.951872_g124393_i0 PRJNA799842 125966 260 1.951872 5.0748672 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 475 1.1899999999999999e-129   NTclustered gi|51235482|gb|AY598628.1| 82932 g124393 i0 99.615 99.8884615384615 260 1 100 0 1 260 1397 1138 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25971 475 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
8872722 8872722 PRJNA799842_P_NODE_68867_length_344_cov_1.988930_g67294_i0 PRJNA799842 68867 344 1.98893 6.8419192 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 630 3.289999999999999e-176   NTclustered gi|505574760|gb|AY598624.2| 4799 g67294 i0 99.709 100.25 344 1 100 0 1 344 604 947 Pythium torulosum strain CBS 316.33 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 34486 636 0.990566037735849 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium torulosum
10147863 10147863 PRJNA799842_P_NODE_46608_length_416_cov_2.241983_g45035_i0 PRJNA799842 46608 416 2.241983 9.32664928 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 155 3.8299999999999995e-45   NR KAG1691236.1 4784 g45035 i0 62.8 13.9903846153846 129 48 93 0 20 406 54 182 KAG1691236.1 60S ribosomal protein L32 [Phytophthora capsici] diamond 5820 156 0.993589743589744 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
10998740 10998740 PRJNA799842_P_NODE_39049_length_458_cov_1.184416_g37478_i0 PRJNA799842 39049 458 1.184416 5.42462528 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 316 1.43e-81   NTclustered gi|57903352|gb|AY729827.1| 74557 g37478 i0 80.63 91.0502183406114 413 76 90 4 2 412 385 795 Thraustotheca clavata beta-tubulin gene, partial cds blastn 41701 316 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
12273262 12273262 PRJNA799842_P_NODE_164850_length_245_cov_1.877907_g163277_i0 PRJNA799842 164850 245 1.877907 4.60087215 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 425 1.1299999999999999e-114   NTclustered gi|33520250|gb|AY273995.1| 92964 g163277 i0 97.959 101.608163265306 245 5 100 0 1 245 463 707 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 24894 425 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
16097244 16097244 PRJNA799842_P_NODE_34613_length_489_cov_2.596154_g33043_i0 PRJNA799842 34613 489 2.596154 12.69519306 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 837 0   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g33043 i0 97.741 103.513292433538 487 10 99 1 2 488 9961 9476 Pythium ultimum mitochondrion, complete genome blastn 50618 837 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
19920359 19920359 PRJNA799842_P_NODE_144276_length_249_cov_1.750000_g142703_i0 PRJNA799842 144276 249 1.75 4.3575 Phytophthora pluvialis 1330343 SAR_Eukaryotes SAR_Eukaryotes 121 6.09e-23   NTclustered gi|2308292446|gb|OK574297.1| 1330343 g142703 i0 81.633 59.2449799196787 147 25 58 2 1 145 24494 24640 Phytophthora pluvialis voucher NZFS3000 mitochondrion, complete genome blastn 14752 121 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora pluvialis
20346190 20346190 PRJNA799842_P_NODE_93336_length_300_cov_1.625551_g91763_i0 PRJNA799842 93336 300 1.625551 4.876653 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 549 8.119999999999997e-152   NTclustered gi|51235482|gb|AY598628.1| 82932 g91763 i0 99.667 99.8433333333333 300 1 100 0 1 300 1155 856 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29953 549 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
21197493 21197493 PRJNA799842_P_NODE_50937_length_398_cov_1.313846_g49364_i0 PRJNA799842 50937 398 1.313846 5.22910708 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 725 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g49364 i0 99.497 97.0125628140703 398 2 100 0 1 398 52 449 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 38611 725 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
25021415 25021415 PRJNA799842_P_NODE_39940_length_452_cov_1.588391_g38369_i0 PRJNA799842 39940 452 1.588391 7.17952732 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 828 0   NTclustered gi|325194423|emb|FR825253.1| 890382 g38369 i0 99.778 100.648230088496 451 1 99 0 2 452 889 439 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 45493 828 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
25445376 25445376 PRJNA799842_P_NODE_122400_length_264_cov_1.989529_g120827_i0 PRJNA799842 122400 264 1.989529 5.25235656 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 483 7.219999999999998e-132   NTclustered gi|51235482|gb|AY598628.1| 82932 g120827 i0 99.621 97.3863636363636 264 1 100 0 1 264 1357 1620 Pythium arrhenomanes strain CBS 324.62 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25710 483 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium arrhenomanes
26619816 26619816 PRJNA799842_P_NODE_57821_length_374_cov_1.023256_g56248_i0 PRJNA799842 57821 374 1.023256 3.82697744 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 170 1.11e-51   NR KAF0754856.1 112090 g56248 i0 71.9 11.9839572192513 114 32 91.4 0 31 372 2 115 KAF0754856.1 hypothetical protein AaE_005176, partial [Aphanomyces astaci] diamond 4482 170 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
27527933 27527933 PRJNA799842_P_NODE_181363_length_242_cov_0.911243_g179790_i0 PRJNA799842 181363 242 0.911243 2.20520806 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 83.6 1.54e-16   NR KAF0690340.1 120398 g179790 i0 50.6 1.00413223140496 81 36 95.5 1 3 233 526 606 KAF0690340.1 hypothetical protein As57867_018209 [Aphanomyces stellatus] diamond 243 83.6 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27749264 27749264 PRJNA799842_P_NODE_168164_length_245_cov_0.895349_g166591_i0 PRJNA799842 168164 245 0.895349 2.19360505 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 72 1.82e-12   NR KAF1324748.1 82926 g166591 i0 43.2 0.991836734693878 81 43 99.2 1 2 244 253 330 KAF1324748.1 Camkk protein kinase, partial [Globisporangium splendens] diamond 243 72 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
29368301 29368301 PRJNA799842_P_NODE_107989_length_281_cov_1.480769_g106416_i0 PRJNA799842 107989 281 1.480769 4.16096089 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 81.3 1.49e-15   NR XP_012207081.1 695850 g106416 i0 52.9 2.2099644128113902 68 32 72.6 0 281 78 379 446 XP_012207081.1 hypothetical protein SPRG_12331 [Saprolegnia parasitica CBS 223.65] diamond 621 81.6 0.996323529411765 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
29526206 29526206 PRJNA799842_P_NODE_152910_length_248_cov_0.880000_g151337_i0 PRJNA799842 152910 248 0.88 2.1824 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 61.2 1.17e-8   NR KAG7398513.1 109152 g151337 i0 43 8.56451612903226 79 40 91.9 3 248 21 266 342 KAG7398513.1 hypothetical protein PHYBOEH_010970 [Phytophthora boehmeriae] diamond 2124 61.6 0.993506493506494 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora boehmeriae
29810162 29810162 PRJNA799842_P_NODE_158411_length_247_cov_0.885057_g156838_i0 PRJNA799842 158411 247 0.885057 2.18609079 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 74.3 3.06e-13   NR OQR89808.1 74557 g156838 i0 62 3.60728744939271 50 19 60.7 0 2 151 305 354 OQR89808.1 G-protein alpha subunit 1 [Thraustotheca clavata] diamond 891 74.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
29832897 29832897 PRJNA799842_P_NODE_187491_length_241_cov_0.916667_g185918_i0 PRJNA799842 187491 241 0.916667 2.20916747 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 58.5 5.28e-8   NR TYZ58385.1 1485010 g185918 i0 74.4 0.535269709543568 43 11 53.5 0 218 90 192 234 TYZ58385.1 hypothetical protein PybrP1_002005 [[Pythium] brassicae (nom. inval.)] diamond 129 58.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
30189338 30189338 PRJNA799842_P_NODE_62312_length_361_cov_1.017361_g60739_i0 PRJNA799842 62312 361 1.017361 3.67267321 root 1 Root_unresolved Root_unresolved 49.7 5.21e-4   NR XP_008615311.1 1156394 g60739 i0 46.8 0.806094182825485 47 23 39.1 1 358 218 512 556 XP_008615311.1 hypothetical protein SDRG_11067 [Saprolegnia diclina VS20] diamond 291 50.1 0.992015968063872 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
30496479 30496479 PRJNA799842_P_NODE_137713_length_251_cov_0.865169_g136140_i0 PRJNA799842 137713 251 0.865169 2.17157419 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 87.8 5.02e-18   NR KAF1316107.1 82926 g136140 i0 73.2 1.69721115537849 71 11 84.9 1 37 249 382 444 KAF1316107.1 Transcription initiation factor, partial [Globisporangium splendens] diamond 426 87.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
30884485 30884485 PRJNA799842_P_NODE_50054_length_401_cov_4.216463_g48481_i0 PRJNA799842 50054 401 4.216463 16.90801663 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 151 1.3099999999999999e-42   NR KAJ8578052.1 4785 g48481 i0 63.6 5.39401496259352 129 42 95 4 2 382 113 238 KAJ8578052.1 hypothetical protein ON010_g1153 [Phytophthora cinnamomi] diamond 2163 151 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
31010815 31010815 PRJNA799842_P_NODE_177394_length_243_cov_0.905882_g175821_i0 PRJNA799842 177394 243 0.905882 2.20129326 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 160 2.22e-45   NR TMW63243.1 41045 g175821 i0 95.1 9 81 4 100 0 1 243 204 284 TMW63243.1 hypothetical protein Poli38472_002184 [Pythium oligandrum] diamond 2187 160 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31444474 31444474 PRJNA799842_P_NODE_184236_length_242_cov_0.911243_g182663_i0 PRJNA799842 184236 242 0.911243 2.20520806 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 66.2 1.91e-10   NR XP_008876288.1 157072 g182663 i0 43.5 4.98347107438016 85 41 96.7 3 236 3 528 612 XP_008876288.1 hypothetical protein H310_11390 [Aphanomyces invadans] diamond 1206 66.2 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
31982095 31982095 PRJNA799842_P_NODE_100898_length_290_cov_0.976959_g99325_i0 PRJNA799842 100898 290 0.976959 2.8331811 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 75.9 1.51e-13   NR OQR87300.1 1202772 g99325 i0 45.6 0.931034482758621 90 46 90 1 28 288 603 692 OQR87300.1 hypothetical protein ACHHYP_09146 [Achlya hypogyna] diamond 270 75.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
32149517 32149517 PRJNA799842_P_NODE_16738_length_750_cov_2.549483_g15300_i0 PRJNA799842 16738 750 2.549483 19.1211225 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 258 3.93e-82   NR XP_024578878.1 4781 g15300 i0 51.7 20.804 230 111 92 0 690 1 15 244 XP_024578878.1 hydroxymethylglutaryl-mitochondrial-like [Plasmopara halstedii] diamond 15603 259 0.996138996138996 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
32307929 32307929 PRJNA799842_P_NODE_106519_length_283_cov_1.347619_g104946_i0 PRJNA799842 106519 283 1.347619 3.81376177 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0301   NR TMW55111.1 41045 g104946 i0 29.5 1.6113074204947 78 52 79.5 1 239 15 252 329 TMW55111.1 hypothetical protein Poli38472_013873 [Pythium oligandrum] diamond 456 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32434490 32434490 PRJNA799842_P_NODE_30039_length_531_cov_1.344978_g28478_i0 PRJNA799842 30039 531 1.344978 7.14183318 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 47 0.0119   NR XP_009833416.1 112090 g28478 i0 41.7 1.42937853107345 84 44 45.8 3 512 270 25 106 XP_009833416.1 hypothetical protein H257_09006 [Aphanomyces astaci] diamond 759 47 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
32677556 32677556 PRJNA799842_P_NODE_188560_length_241_cov_0.916667_g186987_i0 PRJNA799842 188560 241 0.916667 2.20916747 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 139 4.06e-36   NR TMW63289.1 41045 g186987 i0 82.5 0.995850622406639 80 14 99.6 0 240 1 1100 1179 TMW63289.1 hypothetical protein Poli38472_002230 [Pythium oligandrum] diamond 240 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;