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contig_metadata

21 rows where bioproject = "PRJNA798905" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

bioproject 1

  • PRJNA798905 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2068062 2068062 PRJNA798905_S_NODE_36542_length_249_cov_1.750000_g36093_i0 PRJNA798905 36542 249 1.75 4.3575 Kribbella sp. CA-293567 3002436 Bacteria Bacteria 62.1 3.74e-5   NTclustered gi|2425436797|gb|CP114065.1| 3002436 g36093 i0 100 22.8072289156627 33 0 13 0 163 195 3580468 3580500 Kribbella sp. CA-293567 chromosome, complete genome blastn 5679 62.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella sp. CA-293567
4620892 4620892 PRJNA798905_S_NODE_7584_length_488_cov_5.125301_g7135_i0 PRJNA798905 7584 488 5.125301 25.01146888 Tsukamurella tyrosinosolvens 57704 Bacteria Bacteria 701 0   NTclustered gi|2459075662|gb|CP119372.1| 57704 g7135 i0 92.638 8.99180327868852 489 32 99 4 1 487 1448357 1447871 Tsukamurella tyrosinosolvens strain NAN1 chromosome blastn 4388 701 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens
11422192 11422192 PRJNA798905_S_NODE_40629_length_237_cov_5.853659_g40180_i0 PRJNA798905 40629 237 5.853659 13.87317183 Bacteria 2 Bacteria Bacteria 250 7.0299999999999995e-62   NTclustered gi|1418363025|gb|CP030287.1| 2099583 g40180 i0 85.654 2 237 34 100 0 1 237 8618876 8619112 Streptomyces sp. ICC1 chromosome blastn 474 250 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ICC1
12697816 12697816 PRJNA798905_S_NODE_34470_length_256_cov_1.426230_g34021_i0 PRJNA798905 34470 256 1.42623 3.6511488 Mycobacteriales 85007 Bacteria Bacteria 83.2 1.57e-17   NR WP_358199943.1 37330 g34021 i0 69.4 2.28515625 49 15 57.4 0 256 110 147 195 WP_358199943.1 hypothetical protein [Nocardia nova] diamond 585 83.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia nova
17370792 17370792 PRJNA798905_S_NODE_42154_length_230_cov_2.286624_g41705_i0 PRJNA798905 42154 230 2.286624 5.2592352 Micrococcus luteus 1270 Bacteria Bacteria 303 5.13e-78   NTclustered gi|1875928653|gb|CP059046.1| 1270 g41705 i0 90.476 2.5304347826087 231 20 100 2 1 230 75270 75499 Micrococcus luteus strain R17 chromosome, complete genome blastn 582 303 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
22468881 22468881 PRJNA798905_S_NODE_17218_length_354_cov_1.900356_g16769_i0 PRJNA798905 17218 354 1.900356 6.72726024 Corynebacterium minutissimum 38301 Bacteria Bacteria 597 3.43e-166   NTclustered gi|1986087704|gb|CP069533.1| 38301 g16769 i0 97.708 360.579096045198 349 4 98 2 1 347 1163920 1163574 Corynebacterium minutissimum strain FDAARGOS_1196 chromosome, complete genome blastn 127645 597 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium minutissimum
22469670 22469670 PRJNA798905_S_NODE_9358_length_447_cov_11.160428_g8909_i0 PRJNA798905 9358 447 11.160428 49.88711316 Nocardioides terrisoli 3388267 Bacteria Bacteria 669 0   NTclustered gi|2579173395|gb|CP134227.1| 3388267 g8909 i0 96.333 215.391498881432 409 11 91 4 1 407 390947 390541 Nocardioides terrisoli strain YR1 chromosome, complete genome blastn 96280 669 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides terrisoli
22895751 22895751 PRJNA798905_S_NODE_26898_length_291_cov_4.458716_g26449_i0 PRJNA798905 26898 291 4.458716 12.97486356 Bacteria 2 Bacteria Bacteria 538 1.6999999999999994e-148   NTclustered gi|1418363025|gb|CP030287.1| 2099583 g26449 i0 100 5.28178694158076 291 0 100 0 1 291 8619339 8619629 Streptomyces sp. ICC1 chromosome blastn 1537 538 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ICC1
24169965 24169965 PRJNA798905_S_NODE_40579_length_238_cov_2.296970_g40130_i0 PRJNA798905 40579 238 2.29697 5.4667886 Corynebacterium 1716 Bacteria Bacteria 359 1.12e-94   NTclustered gi|2099489108|gb|CP083646.1| 108486 g40130 i0 94.068 2.96218487394958 236 14 99 0 3 238 2650745 2650980 Corynebacterium falsenii strain FDAARGOS_1494 chromosome, complete genome blastn 705 359 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium falsenii
27211814 27211814 PRJNA798905_S_NODE_1302_length_1227_cov_281.519931_g118_i3 PRJNA798905 1302 1227 281.519931 3454.24955337 Streptomyces sp. NPDC 1931 Bacteria Bacteria 48.9 0.0154   NR WP_389241032.1 3364690 g118 i3 32.1 0.198044009779951 81 51 19.6 2 247 8 3 80 WP_389241032.1 phosphotransferase [Streptomyces sp. NPDC004111] diamond 243 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC004111
27243593 27243593 PRJNA798905_S_NODE_27943_length_286_cov_2.084507_g27494_i0 PRJNA798905 27943 286 2.084507 5.96169002 Actinomycetota bacterium 2900548 Bacteria Bacteria 88.6 4.94e-18   NR MBM3688387.1 2900548 g27494 i0 55.2 8.2027972027972 87 33 88.1 2 31 282 101 184 MBM3688387.1 DNA topoisomerase 4 subunit A [Actinomycetota bacterium] diamond 2346 88.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27433447 27433447 PRJNA798905_S_NODE_9783_length_440_cov_2.653951_g9334_i0 PRJNA798905 9783 440 2.653951 11.6773844 Tsukamurella tyrosinosolvens 57704 Bacteria Bacteria 124 2.3999999999999999e-32   NR WP_367582384.1 57704 g9334 i0 50.4 0.865909090909091 127 59 83.9 2 377 9 48 174 WP_367582384.1 HNH endonuclease signature motif containing protein [Tsukamurella tyrosinosolvens] diamond 381 124 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Tsukamurellaceae Tsukamurella Tsukamurella tyrosinosolvens
27568427 27568427 PRJNA798905_S_NODE_17404_length_352_cov_5.136201_g16955_i0 PRJNA798905 17404 352 5.136201 18.07942752 Bacteria 2 Bacteria Bacteria 110 2.22e-28   NR HET9773339.1 2080302 g16955 i0 54.9 1.78125 102 43 86.9 2 333 28 27 125 HET9773339.1 NADAR family protein [Acidimicrobiia bacterium] diamond 627 110 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
28727789 28727789 PRJNA798905_S_NODE_567_length_1848_cov_230.835493_g118_i1 PRJNA798905 567 1848 230.835493 4265.83991064 Streptomyces sp. NPDC 1931 Bacteria Bacteria 48.9 0.0268   NR WP_389241032.1 3364690 g118 i1 31.9 0.152597402597403 94 59 14.9 3 719 994 3 93 WP_389241032.1 phosphotransferase [Streptomyces sp. NPDC004111] diamond 282 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC004111
29169932 29169932 PRJNA798905_S_NODE_36009_length_250_cov_3.338983_g35560_i0 PRJNA798905 36009 250 3.338983 8.3474575 Cellulomonas composti 266130 Bacteria Bacteria 43.5 0.0215   NR WP_146842518.1 266130 g35560 i0 36.4 1.812 77 34 82.8 4 212 6 771 840 WP_146842518.1 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein [Cellulomonas composti] diamond 453 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas composti
29201499 29201499 PRJNA798905_S_NODE_249_length_2756_cov_242.388744_g118_i0 PRJNA798905 249 2756 242.388744 6680.23378464 Streptomyces sp. NPDC 1931 Bacteria Bacteria 48.9 0.0436   NR WP_389241032.1 3364690 g118 i0 31.9 0.102322206095791 94 59 10 3 2038 1763 3 93 WP_389241032.1 phosphotransferase [Streptomyces sp. NPDC004111] diamond 282 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC004111
30527849 30527849 PRJNA798905_S_NODE_24293_length_305_cov_6.431034_g23844_i0 PRJNA798905 24293 305 6.431034 19.6146537 Curtobacterium ammoniigenes 395387 Bacteria Bacteria 48.9 1.94e-4   NR WP_066514309.1 395387 g23844 i0 45.5 0.649180327868852 66 34 63 1 274 83 35 100 WP_066514309.1 hypothetical protein [Curtobacterium ammoniigenes] diamond 198 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium ammoniigenes
30749070 30749070 PRJNA798905_S_NODE_1774_length_1032_cov_22.628780_g1415_i0 PRJNA798905 1774 1032 22.62878 233.5290096 Streptomyces sp. BRB 1931 Bacteria Bacteria 409 2.04e-139   NR WP_196191622.1 2769544 g1415 i0 83.4 0.73546511627907 253 42 73.5 0 774 16 98 350 WP_196191622.1 hypothetical protein [Streptomyces sp. BRB081] diamond 759 409 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. BRB081
31222818 31222818 PRJNA798905_S_NODE_7895_length_480_cov_5.068796_g7446_i0 PRJNA798905 7895 480 5.068796 24.3302208 Streptomyces sp. CHB9.2 2841670 Bacteria Bacteria 220 1.5600000000000001e-63   NR WP_252940890.1 2841670 g7446 i0 67.7 0.9875 158 51 98.8 0 7 480 8 165 WP_252940890.1 hypothetical protein [Streptomyces sp. CHB9.2] diamond 474 220 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. CHB9.2
31823846 31823846 PRJNA798905_S_NODE_27277_length_289_cov_6.703704_g26828_i0 PRJNA798905 27277 289 6.703704 19.37370456 Coriobacteriaceae bacterium 2011094 Bacteria Bacteria 43.1 0.0451   NR MDO4436993.1 2011094 g26828 i0 35.7 0.726643598615917 70 38 66.4 3 3 194 164 232 MDO4436993.1 DNA repair protein [Coriobacteriaceae bacterium] diamond 210 43.1 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Coriobacteriales Coriobacteriaceae   Coriobacteriaceae bacterium
31887212 31887212 PRJNA798905_S_NODE_37197_length_247_cov_3.971264_g36748_i0 PRJNA798905 37197 247 3.971264 9.80902208 Haloechinothrix halophila 1069073 Bacteria Bacteria 42.7 0.0377   NR WP_034268929.1 1069073 g36748 i0 42.9 0.595141700404858 49 24 54.7 1 221 87 103 151 WP_034268929.1 amidohydrolase [Haloechinothrix halophila] diamond 147 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Haloechinothrix Haloechinothrix halophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;