RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA798905" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA798905 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27938493 27938493 PRJNA798905_S_NODE_665_length_1708_cov_589.972477_g449_i0 PRJNA798905 665 1708 589.972477 10076.72990716 Acidobacteriota bacterium 1978231 Bacteria Bacteria 56.2 2.56e-5   NR PYT20463.1 1978231 g449 i0 30.9 0.330210772833724 94 62 16.5 1 893 1174 60 150 PYT20463.1 MAG: hypothetical protein DMG57_42040 [Acidobacteriota bacterium] diamond 564 56.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28957994 28957994 PRJNA798905_S_NODE_13188_length_392_cov_3.040752_g12739_i0 PRJNA798905 13188 392 3.040752 11.91974784 Bacteria 2 Bacteria Bacteria 52.8 6.19e-5   NR MCI0489510.1 2052146 g12739 i0 28.2 4.59948979591837 124 84 93.4 2 376 11 179 299 MCI0489510.1 PhoH family protein [Blastocatellia bacterium] diamond 1803 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
29769576 29769576 PRJNA798905_S_NODE_40091_length_240_cov_3.736527_g39642_i0 PRJNA798905 40091 240 3.736527 8.9676648 Sulfidibacter corallicola 2818388 Bacteria Bacteria 57.8 1.91e-7   NR WP_237382810.1 2818388 g39642 i0 39.2 0.925 74 44 92.5 1 7 228 2260 2332 WP_237382810.1 immunoglobulin domain-containing protein [Sulfidibacter corallicola] diamond 222 57.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Acanthopleuribacterales Acanthopleuribacteraceae Sulfidibacter Sulfidibacter corallicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;