RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA798905", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA798905 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10995681 10995681 PRJNA798905_S_NODE_12689_length_398_cov_3.033846_g12240_i0 PRJNA798905 12689 398 3.033846 12.07470708 Geomonas subterranea 2847989 Bacteria Bacteria 87.9 1.04e-12   NTclustered gi|2060227305|gb|CP077683.1| 2847989 g12240 i0 76.374 0.824120603015075 182 31 44 4 221 396 2030486 2030311 Geomonas subterranea strain RG2 chromosome, complete genome blastn 328 87.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas subterranea
28538538 28538538 PRJNA798905_S_NODE_6187_length_537_cov_4.191810_g5738_i0 PRJNA798905 6187 537 4.19181 22.5100197 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 45.1 0.0446   NR MEW6595639.1 2202153 g5738 i0 28.3 0.592178770949721 106 74 59.2 2 159 476 2 105 MEW6595639.1 DUF4376 domain-containing protein [Thermodesulfobacteriota bacterium] diamond 318 45.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30591040 30591040 PRJNA798905_S_NODE_27273_length_289_cov_7.171296_g26824_i0 PRJNA798905 27273 289 7.171296 20.72504544 Nitratidesulfovibrio sp. 12 2802297 Bacteria Bacteria 85.1 1.49e-17   NR WP_333504486.1 3084053 g26824 i0 52.4 0.8719723183391 84 40 87.2 0 253 2 1 84 WP_333504486.1 SDR family oxidoreductase [Nitratidesulfovibrio sp. 1201_IL3209] diamond 252 85.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio sp. 1201_IL3209
30843971 30843971 PRJNA798905_S_NODE_38074_length_245_cov_2.680233_g37625_i0 PRJNA798905 38074 245 2.680233 6.56657085 Desulfocicer vacuolatum 2298 Bacteria Bacteria 84.3 1.68e-18   NR WP_084068219.1 2298 g37625 i0 51.9 4.82448979591837 81 37 99.2 2 244 2 19 97 WP_084068219.1 macro domain-containing protein [Desulfocicer vacuolatum] diamond 1182 84.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfocicer Desulfocicer vacuolatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;