RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA798905", tax_kingdom = "Metazoa" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA798905 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10995936 10995936 PRJNA798905_S_NODE_24049_length_307_cov_1.987179_g23600_i0 PRJNA798905 24049 307 1.987179 6.10063953 Biomphalaria glabrata 6526 Mollusca Mollusca 62.1 4.76e-5   NTclustered gi|2502134919|ref|XM_056013775.1| 6526 g23600 i0 100 0.723127035830619 33 0 11 0 41 73 232 264 PREDICTED: Biomphalaria glabrata guanine nucleotide-binding protein-like 3 homolog (LOC106077405), transcript variant X5, mRNA blastn 222 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
14820435 14820435 PRJNA798905_S_NODE_29392_length_279_cov_1.495146_g28943_i0 PRJNA798905 29392 279 1.495146 4.17145734 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g28943 i0 100 0.100358422939068 28 0 10 0 94 121 33834045 33834018 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23744834 23744834 PRJNA798905_S_NODE_29959_length_276_cov_2.389163_g29510_i0 PRJNA798905 29959 276 2.389163 6.59408988 Bradybaena similaris 145626 Mollusca Mollusca 58.4 5.45e-4   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g29510 i0 97.059 0.123188405797101 34 1 12 0 195 228 10542505 10542472 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;