RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA798905", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA798905 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31665740 31665740 PRJNA798905_S_NODE_25837_length_297_cov_2.861607_g25388_i0 PRJNA798905 25837 297 2.861607 8.49897279 Planctomycetota bacterium 2026780 Bacteria Bacteria 54.3 6.11e-6   NR MBI4231095.1 2026780 g25388 i0 41.8 2.12121212121212 67 33 61.6 2 248 66 126 192 MBI4231095.1 DNA polymerase I [Planctomycetota bacterium] diamond 630 54.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32614787 32614787 PRJNA798905_S_NODE_15060_length_373_cov_8.253333_g14611_i0 PRJNA798905 15060 373 8.253333 30.78493209 Gemmataceae bacterium 2052164 Bacteria Bacteria 44.3 0.0259   NR MBY0460673.1 2052164 g14611 i0 40.7 0.474530831099196 59 29 42.6 1 355 197 58 116 MBY0460673.1 hypothetical protein [Gemmataceae bacterium] diamond 177 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32781016 32781016 PRJNA798905_S_NODE_39500_length_242_cov_1.355030_g39051_i0 PRJNA798905 39500 242 1.35503 3.2791726 PVC group 1783257 Bacteria Bacteria 59.3 5.38e-8   NR MEX0716799.1 2026779 g39051 i0 43.4 13.0165289256198 76 43 94.2 0 9 236 234 309 MEX0716799.1 pyruvate carboxylase [Planctomycetaceae bacterium] diamond 3150 59.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;