RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA798905" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA798905 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29106749 29106749 PRJNA798905_S_NODE_8528_length_465_cov_2.928571_g8079_i0 PRJNA798905 8528 465 2.928571 13.61785515 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 145 5.12e-38   NR HRD54935.1 2052176 g8079 i0 100 0.419354838709677 65 0 41.9 0 464 270 424 488 HRD54935.1 FAD-binding oxidoreductase [Parachlamydiaceae bacterium] diamond 195 145 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30125971 30125971 PRJNA798905_S_NODE_25012_length_301_cov_4.938596_g24563_i0 PRJNA798905 25012 301 4.938596 14.86517396 PVC group 1783257 Bacteria Bacteria 43.9 0.0304   NR MCX6954077.1 2026799 g24563 i0 44.3 1.0265780730897 61 25 56.8 4 44 214 214 269 MCX6954077.1 immunoglobulin domain-containing protein [Verrucomicrobiota bacterium] diamond 309 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30338779 30338779 PRJNA798905_S_NODE_9092_length_452_cov_9.205805_g8643_i0 PRJNA798905 9092 452 9.205805 41.6102386 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 218 1.98e-67   NR MFH1190873.1 2035772 g8643 i0 68 0.995575221238938 150 47 99.6 1 3 452 178 326 MFH1190873.1 FAD:protein FMN transferase [Candidatus Omnitrophota bacterium] diamond 450 218 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31665740 31665740 PRJNA798905_S_NODE_25837_length_297_cov_2.861607_g25388_i0 PRJNA798905 25837 297 2.861607 8.49897279 Planctomycetota bacterium 2026780 Bacteria Bacteria 54.3 6.11e-6   NR MBI4231095.1 2026780 g25388 i0 41.8 2.12121212121212 67 33 61.6 2 248 66 126 192 MBI4231095.1 DNA polymerase I [Planctomycetota bacterium] diamond 630 54.3 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31823845 31823845 PRJNA798905_S_NODE_26017_length_296_cov_2.547085_g25568_i0 PRJNA798905 26017 296 2.547085 7.5393716 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 62.8 2.67e-10   NR MFH1858557.1 2035772 g25568 i0 41.1 0.962837837837838 95 47 96.3 4 295 11 7 92 MFH1858557.1 7-cyano-7-deazaguanine synthase [Candidatus Omnitrophota bacterium] diamond 285 62.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32614787 32614787 PRJNA798905_S_NODE_15060_length_373_cov_8.253333_g14611_i0 PRJNA798905 15060 373 8.253333 30.78493209 Gemmataceae bacterium 2052164 Bacteria Bacteria 44.3 0.0259   NR MBY0460673.1 2052164 g14611 i0 40.7 0.474530831099196 59 29 42.6 1 355 197 58 116 MBY0460673.1 hypothetical protein [Gemmataceae bacterium] diamond 177 44.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32781016 32781016 PRJNA798905_S_NODE_39500_length_242_cov_1.355030_g39051_i0 PRJNA798905 39500 242 1.35503 3.2791726 PVC group 1783257 Bacteria Bacteria 59.3 5.38e-8   NR MEX0716799.1 2026779 g39051 i0 43.4 13.0165289256198 76 43 94.2 0 9 236 234 309 MEX0716799.1 pyruvate carboxylase [Planctomycetaceae bacterium] diamond 3150 59.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;