RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA798905" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 9 ✖

bioproject 1

  • PRJNA798905 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5046254 5046254 PRJNA798905_S_NODE_20224_length_331_cov_2.298450_g19775_i0 PRJNA798905 20224 331 2.29845 7.6078695 root 1 Root_unresolved Root_unresolved 606 5.299999999999998e-169   NTclustered gi|1251766462|dbj|AK448045.1| 4565 g19775 i0 99.698 99.9214501510574 331 1 100 0 1 331 2910 3240 Triticum aestivum mRNA, clone: tplb0045n17, cultivar Chinese Spring blastn 33074 612 0.990196078431373 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
5046342 5046342 PRJNA798905_S_NODE_29444_length_278_cov_11.985366_g28995_i0 PRJNA798905 29444 278 11.985366 33.31931748 Eukaryota 2759 Plants Plants 56.5 0.002   NTclustered gi|2917566876|emb|OZ228610.1| 13385 g28995 i0 97.059 0.856115107913669 34 0 12 1 143 175 49713368 49713335 Calluna vulgaris genome assembly, chromosome: 7 blastn 238 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
5895989 5895989 PRJNA798905_S_NODE_4625_length_618_cov_17.594495_g4184_i0 PRJNA798905 4625 618 17.594495 108.7339791 Dioscorea cayenensis 29710 Plants Plants 411 8.78e-110   NTclustered gi|1221815424|dbj|LC219412.1| 55577 g4184 i0 79.615 2.02912621359223 623 88 99 31 1 614 2035 1443 Dioscorea rotundata mitochondrial DNA, contig: TDr_Mt_scaffold39_size3100, cultivar: TDr96_F1 blastn 1254 411 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dioscoreales Dioscoreaceae Dioscorea Dioscorea cayenensis
13545836 13545836 PRJNA798905_S_NODE_37731_length_246_cov_1.780347_g37282_i0 PRJNA798905 37731 246 1.780347 4.37965362 Triticum monococcum 4568 Plants Plants 169 2.11e-37   NTclustered gi|2581912921|emb|OY737857.1| 4568 g37282 i0 97.938 25.6707317073171 97 2 43 0 3 99 52735431 52735335 Triticum monococcum genome assembly, chromosome: UA blastn 6315 169 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum monococcum
19069780 19069780 PRJNA798905_S_NODE_12875_length_395_cov_212.931677_g12426_i0 PRJNA798905 12875 395 212.931677 841.08012415 Magnoliopsida 3398 Plants Plants 52.8 0.038   NTclustered gi|2748510651|gb|CP158653.1| 3483 g12426 i0 100 0.212658227848101 28 0 7 0 1 28 42476467 42476440 Cannabis sativa cultivar ERBxHO40_23 chromosome 1 blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Cannabaceae Cannabis Cannabis sativa
19919330 19919330 PRJNA798905_S_NODE_7216_length_499_cov_6.133803_g6767_i0 PRJNA798905 7216 499 6.133803 30.60767697 Rosa rugosa 74645 Plants Plants 54.7 0.014   NTclustered gi|2646215908|ref|XR_009845426.1| 74645 g6767 i0 100 0.755511022044088 29 0 6 0 391 419 2311 2339 PREDICTED: Rosa rugosa uncharacterized LOC133707929 (LOC133707929), transcript variant X8, ncRNA blastn 377 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Rosa Rosa rugosa
21194404 21194404 PRJNA798905_S_NODE_24397_length_305_cov_2.297414_g23948_i0 PRJNA798905 24397 305 2.297414 7.0071127 Cryptomeria japonica 3369 Plants Plants 54.7 0.008   NTclustered gi|2587837754|dbj|LC313175.1| 3369 g23948 i0 87.5 0.157377049180328 48 4 16 2 128 175 8001 8046 Cryptomeria japonica DNA, BAC clone: BAC754_P17, contig: BAC754_P17_contig00003 blastn 48 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
21620178 21620178 PRJNA798905_S_NODE_14977_length_374_cov_4.720930_g14528_i0 PRJNA798905 14977 374 4.72093 17.6562782 root 1 Root_unresolved Root_unresolved 680 0   NTclustered gi|1251766462|dbj|AK448045.1| 4565 g14528 i0 100 98.427807486631 368 0 98 0 1 368 3828 4195 Triticum aestivum mRNA, clone: tplb0045n17, cultivar Chinese Spring blastn 36812 680 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
23744677 23744677 PRJNA798905_S_NODE_23159_length_312_cov_2.765690_g22710_i0 PRJNA798905 23159 312 2.76569 8.6289528 Nicotiana plumbaginifolia 4092 Plants Plants 448 3.1799999999999997e-121   NTclustered gi|44843907|emb|AJ617157.1| 4092 g22710 i0 97.004 45.6378205128205 267 7 86 1 1 267 100 365 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np380 blastn 14239 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana plumbaginifolia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;