RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA798511" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA798511 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2066630 2066630 PRJNA798511_P_NODE_63082_length_308_cov_1.310638_g58816_i0 PRJNA798511 63082 308 1.310638 4.03676504 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 168 4.67e-51   NR XP_004341446.1 1257118 g58816 i0 86.9 0.964285714285714 99 13 96.4 0 1 297 61 159 XP_004341446.1 core histone h2a/h2b/h3/h4 superfamily protein [Acanthamoeba castellanii str. Neff] diamond 297 168 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26737002 26737002 PRJNA798511_P_NODE_85741_length_255_cov_1.587912_g81475_i0 PRJNA798511 85741 255 1.587912 4.0491756 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.7 1.49e-4   NR XP_004339560.1 1257118 g81475 i0 34.9 0.976470588235294 83 46 96.5 2 251 6 299 374 XP_004339560.1 oxidoreductase, aldo/keto reductase superfamily protein [Acanthamoeba castellanii str. Neff] diamond 249 49.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29832801 29832801 PRJNA798511_P_NODE_43751_length_393_cov_1.178125_g39487_i0 PRJNA798511 43751 393 1.178125 4.63003125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 7.2e-16   NR XP_004340818.1 1257118 g39487 i0 46.6 1.55725190839695 103 49 75.6 3 32 328 24 124 XP_004340818.1 uncharacterized protein ACA1_040820 [Acanthamoeba castellanii str. Neff] diamond 612 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30938794 30938794 PRJNA798511_P_NODE_92534_length_248_cov_0.880000_g88268_i0 PRJNA798511 92534 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 102 5.4e-23   NR XP_004367478.1 1257118 g88268 i0 76.8 1.81451612903226 69 14 81 1 243 43 152 220 XP_004367478.1 heat shock protein 90 alpha, putative [Acanthamoeba castellanii str. Neff] diamond 450 102 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;