RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA798511" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA798511 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3342203 3342203 PRJNA798511_P_NODE_86743_length_253_cov_1.711111_g82477_i0 PRJNA798511 86743 253 1.711111 4.32911083 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1620129059|ref|XM_028673465.1| 5849 g82477 i0 100 0.110671936758893 28 0 11 0 124 151 1908 1881 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00469300), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
5893578 5893578 PRJNA798511_P_NODE_21845_length_733_cov_4.683333_g17783_i0 PRJNA798511 21845 733 4.683333 34.32883089 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.006   NTclustered gi|261883347|gb|GQ282199.1| 36329 g17783 i0 96.97 0.0450204638472033 33 1 5 0 5 37 20 52 Plasmodium falciparum 3D7 Pfa-npcR6867, complete sequence blastn 33 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
15246125 15246125 PRJNA798511_P_NODE_35252_length_468_cov_1.640506_g30993_i0 PRJNA798511 35252 468 1.640506 7.67756808 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 65.8 5.84e-6   NTclustered gi|1843571933|ref|XM_034565747.1| 5823 g30993 i0 100 0.275641025641026 35 0 7 0 136 170 612 578 Plasmodium berghei ANKA conserved Plasmodium protein, unknown function (PBANKA_1120600), partial mRNA blastn 129 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei
16093125 16093125 PRJNA798511_P_NODE_47433_length_370_cov_2.053872_g43167_i0 PRJNA798511 47433 370 2.053872 7.5993264 Plasmodium vinckei 5860 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.035   NTclustered gi|1931717150|ref|XM_037634770.1| 54757 g43167 i0 100 0.0756756756756757 28 0 8 0 8 35 579 606 Plasmodium vinckei vinckei conserved Plasmodium protein, unknown function (PVVCY_1304240), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vinckei
18642710 18642710 PRJNA798511_P_NODE_90275_length_250_cov_0.870056_g86009_i0 PRJNA798511 90275 250 0.870056 2.17514 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.05e-5   NTclustered gi|90193412|gb|DQ408048.1| 5833 g86009 i0 100 0.136 34 0 14 0 188 221 201 168 Plasmodium falciparum isolate M2 sequence Type3var_DBL1alpha_seq1 erythrocyte membrane protein 1 (Type3var) gene, partial cds blastn 34 63.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
30275389 30275389 PRJNA798511_P_NODE_41252_length_411_cov_0.991124_g36989_i0 PRJNA798511 41252 411 0.991124 4.07351964 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.32e-7   NR KAF7455888.1 83540 g36989 i0 42.5 0.583941605839416 80 40 54 1 355 134 293 372 KAF7455888.1 putative eukaryotic translation initiation factor 4A, isoform 3 [Cryptosporidium felis] diamond 240 60.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;