RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA798511", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA798511 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28285422 28285422 PRJNA798511_P_NODE_100306_length_243_cov_0.905882_g96040_i0 PRJNA798511 100306 243 0.905882 2.20129326 Thermoplasmata archaeon 1906666 Archaea Archaea 43.9 0.0129   NR RLF48892.1 1906666 g96040 i0 38.9 0.666666666666667 54 33 66.7 0 172 11 27 80 RLF48892.1 MAG: NAD-dependent protein deacylase [Thermoplasmata archaeon] diamond 162 43.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28759207 28759207 PRJNA798511_P_NODE_54367_length_337_cov_2.723485_g50101_i0 PRJNA798511 54367 337 2.723485 9.17814445 Thermoplasmatota archaeon 2806419 Archaea Archaea 44.7 0.0158   NR MDI6707611.1 2806419 g50101 i0 29.1 0.916913946587537 103 57 91.7 3 322 14 107 193 MDI6707611.1 hypothetical protein [Thermoplasmatota archaeon] diamond 309 44.7 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;