RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA798511" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA798511 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18642765 18642765 PRJNA798511_P_NODE_94495_length_247_cov_0.885057_g90229_i0 PRJNA798511 94495 247 0.885057 2.18609079 Methanosarcina sp. MTP4 1434100 Archaea Archaea 52.8 0.022   NTclustered gi|805342629|gb|CP009505.1| 1434100 g90229 i0 100 0.11336032388664 28 0 11 0 15 42 1786294 1786267 Methanosarcina sp. MTP4, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp. MTP4
26769088 26769088 PRJNA798511_P_NODE_97381_length_245_cov_0.895349_g93115_i0 PRJNA798511 97381 245 0.895349 2.19360505 Candidatus Nanohaloarchaea archaeon 2594798 Archaea Archaea 66.2 1.98e-10   NR MFB6245005.1 2594798 g93115 i0 44.3 0.96734693877551 79 37 96.7 1 2 238 443 514 MFB6245005.1 ATP-dependent endonuclease [Candidatus Nanohaloarchaea archaeon] diamond 237 66.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Nanohaloarchaea       Candidatus Nanohaloarchaea archaeon
28001696 28001696 PRJNA798511_P_NODE_99645_length_243_cov_0.905882_g95379_i0 PRJNA798511 99645 243 0.905882 2.20129326 Methanoregula boonei 358766 Archaea Archaea 42.4 0.0495   NR WP_012107125.1 358766 g95379 i0 46.5 0.530864197530864 43 22 51.9 1 69 194 120 162 WP_012107125.1 MFS transporter [Methanoregula boonei] diamond 129 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula boonei
28285422 28285422 PRJNA798511_P_NODE_100306_length_243_cov_0.905882_g96040_i0 PRJNA798511 100306 243 0.905882 2.20129326 Thermoplasmata archaeon 1906666 Archaea Archaea 43.9 0.0129   NR RLF48892.1 1906666 g96040 i0 38.9 0.666666666666667 54 33 66.7 0 172 11 27 80 RLF48892.1 MAG: NAD-dependent protein deacylase [Thermoplasmata archaeon] diamond 162 43.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28727734 28727734 PRJNA798511_P_NODE_101867_length_242_cov_0.911243_g97601_i0 PRJNA798511 101867 242 0.911243 2.20520806 Methanobacteriota archaeon 2026739 Archaea Archaea 67 1.01e-10   NR MDA8609943.1 2026739 g97601 i0 44.4 1.00413223140496 81 43 97.9 1 6 242 445 525 MDA8609943.1 zinc-ribbon domain-containing protein [Methanobacteriota archaeon] diamond 243 67 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
28759207 28759207 PRJNA798511_P_NODE_54367_length_337_cov_2.723485_g50101_i0 PRJNA798511 54367 337 2.723485 9.17814445 Thermoplasmatota archaeon 2806419 Archaea Archaea 44.7 0.0158   NR MDI6707611.1 2806419 g50101 i0 29.1 0.916913946587537 103 57 91.7 3 322 14 107 193 MDI6707611.1 hypothetical protein [Thermoplasmatota archaeon] diamond 309 44.7 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
32181205 32181205 PRJNA798511_P_NODE_75298_length_277_cov_1.122549_g71032_i0 PRJNA798511 75298 277 1.122549 3.10946073 root 1 Root_unresolved Root_unresolved 43.1 0.0092   NR HJJ67539.1 2058474 g71032 i0 45.5 0.953068592057762 44 22 45.5 1 180 55 21 64 HJJ67539.1 hypothetical protein [Methanocorpusculum sp.] diamond 264 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;