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contig_metadata

31 rows where bioproject = "PRJNA798511", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 31 ✖

bioproject 1

  • PRJNA798511 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
790710 790710 PRJNA798511_P_NODE_55661_length_333_cov_0.923077_g51395_i0 PRJNA798511 55661 333 0.923077 3.07384641 Parastrongyloides trichosuri 131310 Nematoda Nematoda 60.2 1.88e-4   NTclustered gi|959095881|ref|NC_028620.1| 131310 g51395 i0 81.579 0.228228228228228 76 10 22 4 91 163 8812 8886 Parastrongyloides trichosuri mitochondrial DNA, complete genome, isolate: KNP blastn 76 60.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Parastrongyloides Parastrongyloides trichosuri
8443974 8443974 PRJNA798511_P_NODE_7127_length_1963_cov_32.653439_g5369_i0 PRJNA798511 7127 1963 32.653439 640.98700757 Metazoa 33208 Nematoda Nematoda 163 3.5799999999999993e-43   NR OUC39896.1 6335 g5369 i0 90.1 16.461029037188 81 8 12.4 0 670 912 82 162 OUC39896.1 ubiquitin--protein ligase [Trichinella nativa] diamond 32313 164 0.99390243902439 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa
10994653 10994653 PRJNA798511_P_NODE_52809_length_344_cov_1.354244_g48543_i0 PRJNA798511 52809 344 1.354244 4.65859936 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.033   NTclustered gi|11094947|gb|AC084497.1|CBRG11J16 6238 g48543 i0 100 0.0813953488372093 28 0 8 0 180 207 14928 14901 Caenorhabditis briggsae cosmid G11J16, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10994755 10994755 PRJNA798511_P_NODE_59549_length_319_cov_1.321138_g55283_i0 PRJNA798511 59549 319 1.321138 4.21443022 Caenorhabditis elegans 6239 Nematoda Nematoda 58.4 6.43e-4   NTclustered gi|687865720|emb|LK927684.1| 6239 g55283 i0 92.5 0.250783699059561 40 3 13 0 177 216 60412 60373 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000135 blastn 80 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12270400 12270400 PRJNA798511_P_NODE_76330_length_275_cov_0.925743_g72064_i0 PRJNA798511 76330 275 0.925743 2.54579325 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.007   NTclustered gi|687865919|emb|LK927926.1| 6239 g72064 i0 96.97 0.24 33 0 12 1 122 153 8194 8162 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000341 blastn 66 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25016861 25016861 PRJNA798511_P_NODE_38000_length_439_cov_0.795082_g33739_i0 PRJNA798511 38000 439 0.795082 3.49040998 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.003   NTclustered gi|687866076|emb|LK928113.1| 6239 g33739 i0 96.97 0.214123006833713 33 1 8 0 332 364 12378 12346 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000106 blastn 94 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26737000 26737000 PRJNA798511_P_NODE_79861_length_267_cov_1.190722_g75595_i0 PRJNA798511 79861 267 1.190722 3.17922774 Mesorhabditis belari 2138241 Nematoda Nematoda 43.5 0.0169   NR CAJ0922360.1 2138241 g75595 i0 38.8 4.62921348314607 67 36 73 2 36 230 101 164 CAJ0922360.1 unnamed protein product, partial [Mesorhabditis belari] diamond 1236 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis belari
27433388 27433388 PRJNA798511_P_NODE_13123_length_1223_cov_1.760870_g10052_i0 PRJNA798511 13123 1223 1.76087 21.5354401 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 77.8 1.68e-11   NR CAD5225504.1 465554 g10052 i0 37.9 0.755519215044971 124 38 20.9 2 1156 902 307 430 CAD5225504.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 924 77.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
27473861 27473861 PRJNA798511_P_NODE_99343_length_243_cov_1.358824_g95077_i0 PRJNA798511 99343 243 1.358824 3.30194232 root 1 Root_unresolved Root_unresolved 71.2 3.43e-12   NR XP_045096598.1 6238 g95077 i0 43.8 5.5679012345679 73 41 90.1 0 4 222 262 334 XP_045096598.1 Protein CBG18874 [Caenorhabditis briggsae] diamond 1353 71.6 0.994413407821229 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27600302 27600302 PRJNA798511_P_NODE_100804_length_242_cov_1.366864_g96538_i0 PRJNA798511 100804 242 1.366864 3.30781088 Metazoa 33208 Nematoda Nematoda 52.8 1.08e-5   NR EFO87561.1 31234 g96538 i0 66.7 3.76859504132231 33 11 40.9 0 195 97 720 752 EFO87561.1 hypothetical protein CRE_05388 [Caenorhabditis remanei] diamond 912 53.1 0.994350282485876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
27695102 27695102 PRJNA798511_P_NODE_101064_length_242_cov_0.911243_g96798_i0 PRJNA798511 101064 242 0.911243 2.20520806 Trichuris 36086 Nematoda Nematoda 53.5 5.64e-6   NR CDW51891.1 36087 g96798 i0 53.5 1.59917355371901 43 20 53.3 0 103 231 189 231 CDW51891.1 Pkinase Tyr domain containing protein [Trichuris trichiura] diamond 387 53.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
27749205 27749205 PRJNA798511_P_NODE_86724_length_253_cov_1.711111_g82458_i0 PRJNA798511 86724 253 1.711111 4.32911083 Acanthocheilonema viteae 6277 Nematoda Nematoda 42.7 0.0426   NR VBB35221.1 6277 g82458 i0 37.7 0.723320158102767 61 30 72.3 2 222 40 400 452 VBB35221.1 unnamed protein product, partial [Acanthocheilonema viteae] diamond 183 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
27884252 27884252 PRJNA798511_P_NODE_78965_length_269_cov_1.178571_g74699_i0 PRJNA798511 78965 269 1.178571 3.17035599 Metazoa 33208 Nematoda Nematoda 89.7 8.95e-21   NR XP_045097316.1 6238 g74699 i0 57.7 20.6988847583643 71 30 79.2 0 30 242 1 71 XP_045097316.1 Protein CBG21481 [Caenorhabditis briggsae] diamond 5568 89.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27978959 27978959 PRJNA798511_P_NODE_53345_length_342_cov_0.765799_g49079_i0 PRJNA798511 53345 342 0.765799 2.61903258 Metazoa 33208 Nematoda Nematoda 148 5.539999999999998e-41   NR NP_001368079.1 6239 g49079 i0 67.3 241.438596491228 113 36 99.1 1 341 3 221 332 NP_001368079.1 Actin [Caenorhabditis elegans] diamond 82572 149 0.993288590604027 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
28033224 28033224 PRJNA798511_P_NODE_39805_length_423_cov_0.948571_g35542_i0 PRJNA798511 39805 423 0.948571 4.01245533 Ditylenchus destructor 166010 Nematoda Nematoda 53.9 3.05e-5   NR KAI1702103.1 166010 g35542 i0 34.2 0.517730496453901 73 48 51.8 0 227 9 296 368 KAI1702103.1 transthyretin-like family domain-containing protein [Ditylenchus destructor] diamond 219 53.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
28159588 28159588 PRJNA798511_P_NODE_35085_length_470_cov_1.942065_g30826_i0 PRJNA798511 35085 470 1.942065 9.1277055 Trichuris suis 68888 Nematoda Nematoda 73.6 4.95e-12   NR KFD55864.1 68888 g30826 i0 54.5 1.67872340425532 66 27 40.2 2 190 2 148 213 KFD55864.1 hypothetical protein M513_03303 [Trichuris suis] diamond 789 73.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
28222337 28222337 PRJNA798511_P_NODE_101506_length_242_cov_0.911243_g97240_i0 PRJNA798511 101506 242 0.911243 2.20520806 Dracunculus medinensis 318479 Nematoda Nematoda 41.2 0.0329   NR VDN59110.1 318479 g97240 i0 40 1.26446280991736 60 24 69.4 2 9 176 44 95 VDN59110.1 unnamed protein product [Dracunculus medinensis] diamond 306 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
28222355 28222355 PRJNA798511_P_NODE_39946_length_421_cov_2.471264_g35683_i0 PRJNA798511 39946 421 2.471264 10.40402144 Ancylostoma ceylanicum 53326 Nematoda Nematoda 49.3 0.00113   NR EYB89951.1 53326 g35683 i0 71 0.220902612826603 31 9 22.1 0 177 269 207 237 EYB89951.1 hypothetical protein Y032_0225g2753 [Ancylostoma ceylanicum] diamond 93 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma ceylanicum
28326141 28326141 PRJNA798511_P_NODE_51966_length_348_cov_0.949091_g47700_i0 PRJNA798511 51966 348 0.949091 3.30283668 Trichinella 6333 Nematoda Nematoda 71.2 9.54e-12   NR KRY40850.1 6334 g47700 i0 38.9 8.37931034482759 108 65 92.2 1 5 325 216 323 KRY40850.1 hypothetical protein T01_9772, partial [Trichinella spiralis] diamond 2916 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
28380388 28380388 PRJNA798511_P_NODE_88086_length_251_cov_1.230337_g83820_i0 PRJNA798511 88086 251 1.230337 3.08814587 Auanema sp. JU1783 2878363 Nematoda Nematoda 114 4.74e-28   NR CAI4226329.1 2878363 g83820 i0 63 3.29880478087649 92 25 99.2 2 2 250 131 222 CAI4226329.1 unnamed protein product [Auanema sp. JU1783] diamond 828 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
28768265 28768265 PRJNA798511_P_NODE_18207_length_883_cov_3.572840_g14406_i0 PRJNA798511 18207 883 3.57284 31.5481772 Opisthokonta 33154 Nematoda Nematoda 45.1 0.0425   NR VIP00180.1 6279 g14406 i0 43.8 0.546998867497169 64 33 21.1 2 468 653 32 94 VIP00180.1 Uncharacterized protein BM_BM17156 [Brugia malayi] diamond 483 45.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
28822109 28822109 PRJNA798511_P_NODE_104588_length_230_cov_2.292994_g100322_i0 PRJNA798511 104588 230 2.292994 5.2738862 Trichuris suis 68888 Nematoda Nematoda 80.9 6.81e-16   NR KFD55864.1 68888 g100322 i0 58.3 3.1304347826087 60 25 78.3 0 193 14 138 197 KFD55864.1 hypothetical protein M513_03303 [Trichuris suis] diamond 720 80.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29390916 29390916 PRJNA798511_P_NODE_55549_length_333_cov_1.473077_g51283_i0 PRJNA798511 55549 333 1.473077 4.90534641 Trichuris suis 68888 Nematoda Nematoda 47.4 0.00198   NR KFD47104.1 68888 g51283 i0 40.7 0.486486486486487 54 31 47.7 1 323 165 158 211 KFD47104.1 hypothetical protein M513_12014 [Trichuris suis] diamond 162 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
30053760 30053760 PRJNA798511_P_NODE_14671_length_1096_cov_1.780059_g11362_i0 PRJNA798511 14671 1096 1.780059 19.50944664 Strongyloides ratti 34506 Nematoda Nematoda 58.2 4.43e-5   NR XP_024504236.1 34506 g11362 i0 48.1 0.730839416058394 52 25 14.2 1 321 476 505 554 XP_024504236.1 Serine/threonine-protein kinase/endoribonuclease IRE1 [Strongyloides ratti] diamond 801 58.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30117021 30117021 PRJNA798511_P_NODE_95272_length_246_cov_0.890173_g91006_i0 PRJNA798511 95272 246 0.890173 2.18982558 Pristionchus mayeri 1317129 Nematoda Nematoda 42.7 0.0386   NR GMR41993.1 1317129 g91006 i0 54.1 0.451219512195122 37 17 45.1 0 165 55 172 208 GMR41993.1 hypothetical protein PMAYCL1PPCAC_12188, partial [Pristionchus mayeri] diamond 111 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus mayeri
30243615 30243615 PRJNA798511_P_NODE_28532_length_563_cov_1.777551_g24305_i0 PRJNA798511 28532 563 1.777551 10.00761213 Dracunculus medinensis 318479 Nematoda Nematoda 54.7 1.31e-5   NR VDN53920.1 318479 g24305 i0 44.9 1.62522202486679 49 27 26.1 0 558 412 115 163 VDN53920.1 unnamed protein product [Dracunculus medinensis] diamond 915 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
30243634 30243634 PRJNA798511_P_NODE_68732_length_292_cov_2.063927_g64466_i0 PRJNA798511 68732 292 2.063927 6.02666684 Heterodera trifolii 157864 Nematoda Nematoda 43.5 0.0359   NR KAL3116138.1 157864 g64466 i0 38.2 0.565068493150685 55 33 56.5 1 109 273 177 230 KAL3116138.1 hypothetical protein niasHT_007438 [Heterodera trifolii] diamond 165 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
31159420 31159420 PRJNA798511_P_NODE_87135_length_252_cov_2.759777_g82869_i0 PRJNA798511 87135 252 2.759777 6.95463804 Steinernema hermaphroditum 289476 Nematoda Nematoda 49.7 1.47e-4   NR KAK0420877.1 289476 g82869 i0 37.3 2.72619047619048 83 41 85.7 2 241 26 412 494 KAK0420877.1 hypothetical protein QR680_014941 [Steinernema hermaphroditum] diamond 687 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
31950413 31950413 PRJNA798511_P_NODE_40497_length_417_cov_0.895349_g36234_i0 PRJNA798511 40497 417 0.895349 3.73360533 Haemonchus contortus 6289 Nematoda Nematoda 43.9 0.0457   NR XGW31960.1 6289 g36234 i0 29.9 0.964028776978417 67 36 40.3 1 231 398 31 97 XGW31960.1 hypothetical protein V3C99_010270 [Haemonchus contortus] diamond 402 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
32172231 32172231 PRJNA798511_P_NODE_48518_length_365_cov_0.914384_g44252_i0 PRJNA798511 48518 365 0.914384 3.3375016 Trichinella nelsoni 6336 Nematoda Nematoda 58.9 2.68e-7   NR KRX28105.1 6336 g44252 i0 34.7 0.96986301369863 118 75 97 1 11 364 74 189 KRX28105.1 hypothetical protein T07_5984 [Trichinella nelsoni] diamond 354 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nelsoni
32583446 32583446 PRJNA798511_P_NODE_63439_length_307_cov_1.290598_g59173_i0 PRJNA798511 63439 307 1.290598 3.96213586 Steinernema carpocapsae 34508 Nematoda Nematoda 46.6 0.0036   NR TKR62401.1 34508 g59173 i0 38.9 1.05537459283388 54 32 51.8 1 7 165 916 969 TKR62401.1 hypothetical protein L596_026374 [Steinernema carpocapsae] diamond 324 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;