RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA797655" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA797655 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5891107 5891107 PRJNA797655_S_NODE_39125_length_339_cov_3.560811_g38520_i0 PRJNA797655 39125 339 3.560811 12.07114929 Fibrobacter 832 Bacteria Bacteria 119 1.92e-28   NR NLG38884.1 35828 g38520 i0 94.9 1.56637168141593 59 3 52.2 0 162 338 438 496 NLG38884.1 DUF3536 domain-containing protein [Fibrobacter sp.] diamond 531 119 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
27821286 27821286 PRJNA797655_S_NODE_108664_length_238_cov_1.348718_g108059_i0 PRJNA797655 108664 238 1.348718 3.20994884 root 1 Root_unresolved Root_unresolved 102 3.02e-26   NR WP_407450057.1 35828 g108059 i0 77 3.83193277310924 61 14 76.9 0 183 1 14 74 WP_407450057.1 DUF3310 domain-containing protein [Fibrobacter sp.] diamond 912 103 0.990291262135922 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
29588924 29588924 PRJNA797655_S_NODE_215530_length_172_cov_1.116279_g214925_i0 PRJNA797655 215530 172 1.116279 1.91999988 Bacteria 2 Bacteria Bacteria 42 0.0262   NR QQS05939.1 2052160 g214925 i0 40 1.83139534883721 35 21 61 0 42 146 347 381 QQS05939.1 MAG: glycosyltransferase [Fibrobacterota bacterium] diamond 315 42 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30465043 30465043 PRJNA797655_S_NODE_254913_length_156_cov_2.123894_g254308_i0 PRJNA797655 254913 156 2.123894 3.31327464 Fibrobacter sp. 35828 Bacteria Bacteria 60.5 6.12e-9   NR NLB64220.1 35828 g254308 i0 54.5 0.846153846153846 44 20 84.6 0 20 151 366 409 NLB64220.1 dihydroorotase [Fibrobacter sp.] diamond 132 60.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;