RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA797655" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA797655 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2062345 2062345 PRJNA797655_S_NODE_262722_length_153_cov_4.018182_g262117_i0 PRJNA797655 262722 153 4.018182 6.14781846 uncultured Lunachloris 3049186 Plants Plants 204 3.2699999999999995e-48   NTclustered gi|2515376804|gb|OR101661.1| 3049186 g262117 i0 90.85 95.2745098039216 153 13 100 1 1 153 1134 1285 Uncultured Lunachloris clone mgcl22_AM31 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14577 204 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Lunachloris
8440120 8440120 PRJNA797655_S_NODE_277887_length_150_cov_2.495327_g277282_i0 PRJNA797655 277887 150 2.495327 3.7429905 Nannochloris normandinae 926285 Plants Plants 267 4.009999999999999e-67   NTclustered gi|922575245|gb|JQ921007.1| 926285 g277282 i0 98.675 106.846666666667 151 1 100 1 1 150 607 457 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 16027 267 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
17365366 17365366 PRJNA797655_S_NODE_277394_length_150_cov_4.934579_g276789_i0 PRJNA797655 277394 150 4.934579 7.4018685 Pleurastrosarcina brevispinosa 163096 Plants Plants 272 8.609999999999998e-69   NTclustered gi|698349064|gb|KM462875.1| 163096 g276789 i0 99.333 113.933333333333 150 1 100 0 1 150 56285 56136 Chlorosarcina brevispinosa culture-collection UTEX:1176 chloroplast, partial genome blastn 17090 272 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Pleurastrosarcina Pleurastrosarcina brevispinosa
25444325 25444325 PRJNA797655_S_NODE_73280_length_276_cov_3.553648_g72675_i0 PRJNA797655 73280 276 3.553648 9.80806848 Eukaryota 2759 Plants Plants 52.8 0.025   NTclustered gi|2627911945|ref|NC_084269.1| 1745963 g72675 i0 96.875 0.217391304347826 32 0 12 1 47 78 228750 228780 Hydrocytium acuminatum strain SAG 40.91 chloroplast, complete genome blastn 60 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlorococcaceae Hydrocytium Hydrocytium acuminatum
27275231 27275231 PRJNA797655_S_NODE_95383_length_250_cov_4.082126_g94778_i0 PRJNA797655 95383 250 4.082126 10.205315 Chlorella ohadii 2649997 Plants Plants 42 0.0363   NR KAI7836672.1 2649997 g94778 i0 46.5 0.516 43 22 51.6 1 40 168 47 88 KAI7836672.1 hypothetical protein COHA_009448 [Chlorella ohadii] diamond 129 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella ohadii
30875387 30875387 PRJNA797655_S_NODE_209874_length_174_cov_1.984733_g209269_i0 PRJNA797655 209874 174 1.984733 3.45343542 Micractinium tetrahymenae 2728915 Plants Plants 42 0.0284   NR KAL4457459.1 2728915 g209269 i0 43.1 0.879310344827586 51 27 84.5 1 150 4 333 383 KAL4457459.1 hypothetical protein ABPG75_012324 [Micractinium tetrahymenae] diamond 153 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium tetrahymenae
31665679 31665679 PRJNA797655_S_NODE_263717_length_153_cov_1.745455_g263112_i0 PRJNA797655 263717 153 1.745455 2.67054615 Gonium pectorale 33097 Plants Plants 41.2 0.0371   NR KXZ49562.1 33097 g263112 i0 59.4 0.627450980392157 32 13 62.7 0 100 5 130 161 KXZ49562.1 hypothetical protein GPECTOR_20g417 [Gonium pectorale] diamond 96 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;