RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA797655", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA797655 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2060665 2060665 PRJNA797655_S_NODE_206322_length_176_cov_1.203008_g205717_i0 PRJNA797655 206322 176 1.203008 2.11729408 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 276 8.090000000000001e-70   NTclustered gi|2874254019|emb|OY970344.1| 412056 g205717 i0 94.915 58.0681818181818 177 8 100 1 1 176 735870 736046 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 10220 276 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
3333008 3333008 PRJNA797655_S_NODE_112663_length_234_cov_2.418848_g112058_i0 PRJNA797655 112663 234 2.418848 5.66010432 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 399 6.499999999999999e-107   NTclustered gi|2874254019|emb|OY970344.1| 412056 g112058 i0 97.447 96.0854700854701 235 5 100 1 1 234 737154 737388 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.c.3 genome assembly, chromosome: 1 blastn 22484 399 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
27211753 27211753 PRJNA797655_S_NODE_107962_length_238_cov_3.061538_g107357_i0 PRJNA797655 107962 238 3.061538 7.28646044 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 43.1 0.0262   NR RYD65353.1 2026800 g107357 i0 30 0.882352941176471 70 40 76.9 1 41 223 101 170 RYD65353.1 MAG: cobaltochelatase subunit CobN, partial [Verrucomicrobiaceae bacterium] diamond 210 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27843464 27843464 PRJNA797655_S_NODE_79084_length_269_cov_1.699115_g78479_i0 PRJNA797655 79084 269 1.699115 4.57061935 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.7 0.0478   NR MBN8249179.1 2026799 g78479 i0 54.3 0.390334572490706 35 16 39 0 147 251 73 107 MBN8249179.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 105 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28696282 28696282 PRJNA797655_S_NODE_174427_length_191_cov_3.445946_g173822_i0 PRJNA797655 174427 191 3.445946 6.58175686 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40.4 0.0479   NR MBS0661764.1 2026799 g173822 i0 43.5 0.722513089005236 46 26 72.3 0 182 45 35 80 MBS0661764.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 138 40.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30527787 30527787 PRJNA797655_S_NODE_202073_length_178_cov_1.066667_g201468_i0 PRJNA797655 202073 178 1.066667 1.89866726 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 42.4 0.0217   NR MBL9176073.1 2026801 g201468 i0 48.8 0.691011235955056 41 19 69.1 1 159 37 217 255 MBL9176073.1 acyltransferase family protein [Verrucomicrobiales bacterium] diamond 123 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31823774 31823774 PRJNA797655_S_NODE_178557_length_189_cov_2.301370_g177952_i0 PRJNA797655 178557 189 2.30137 4.3495893 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 43.1 0.014   NR MBA3963233.1 2201154 g177952 i0 35.6 0.936507936507937 59 38 93.7 0 10 186 217 275 MBA3963233.1 hypothetical protein [Chthoniobacterales bacterium] diamond 177 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;