RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA797475" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA797475 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8434438 8434438 PRJNA797475_P_NODE_14347_length_287_cov_1.429907_g14248_i0 PRJNA797475 14347 287 1.429907 4.10383309 Mycoplasma yeatsii 51365 Bacteria Bacteria 518 2.18e-142   NTclustered gi|756767228|gb|CP007520.1| 743967 g14248 i0 99.303 196 287 0 100 1 1 287 255465 255181 Mycoplasma yeatsii GM274B blastn 56252 518 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii
20343419 20343419 PRJNA797475_P_NODE_4996_length_448_cov_2.042667_g4898_i0 PRJNA797475 4996 448 2.042667 9.15114816 Mycoplasma 2093 Bacteria Bacteria 809 0   NTclustered gi|54609775|gb|AY765214.1| 51364 g4898 i0 99.329 186.582589285714 447 3 99 0 2 448 832 386 Mycoplasma cottewii strain ATCC 43093 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 83589 809 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
21619098 21619098 PRJNA797475_P_NODE_30777_length_235_cov_2.388889_g30678_i0 PRJNA797475 30777 235 2.388889 5.61388915 Bacteria 2 Bacteria Bacteria 431 2.3199999999999998e-116   NTclustered gi|365822471|gb|JN935874.1| 51364 g30678 i0 100 157.651063829787 233 0 99 0 1 233 946 1178 Mycoplasma cottewii strain VIS 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 37048 431 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;