RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA797475", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA797475 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7595034 7595034 PRJNA797475_P_NODE_1586_length_760_cov_2.208151_g1497_i0 PRJNA797475 1586 760 2.208151 16.7819476 Pseudomonadati 3379134 Bacteria Bacteria 898 0   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g1497 i0 88.12 101.139473684211 766 77 99 13 2 760 1713584 1712826 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 76866 904 0.993362831858407 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
16083892 16083892 PRJNA797475_P_NODE_18353_length_266_cov_1.595855_g18254_i0 PRJNA797475 18353 266 1.595855 4.2449743 Desulfovibrio desulfuricans 876 Bacteria Bacteria 492 1.2099999999999999e-134   NTclustered gi|2884834435|gb|CP176628.1| 876 g18254 i0 100 131.522556390977 266 0 100 0 1 266 2576 2841 Desulfovibrio desulfuricans strain SFAD67 chromosome, complete genome blastn 34985 492 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
17359969 17359969 PRJNA797475_P_NODE_7534_length_372_cov_4.575251_g7435_i0 PRJNA797475 7534 372 4.575251 17.01993372 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 505 2.26e-138   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g7435 i0 91.129 227.975806451613 372 33 100 0 1 372 1710972 1710601 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 84807 505 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
25443745 25443745 PRJNA797475_P_NODE_28800_length_243_cov_0.905882_g28701_i0 PRJNA797475 28800 243 0.905882 2.20129326 Geobacter 28231 Bacteria Bacteria 159 1.2499999999999999e-34   NTclustered gi|779731694|gb|CP010430.1| 35554 g28701 i0 79.098 56.0123456790123 244 42 98 9 3 241 1766812 1767051 Geobacter sulfurreducens strain AM-1 genome blastn 13611 159 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
28547567 28547567 PRJNA797475_P_NODE_4647_length_463_cov_2.069231_g4549_i0 PRJNA797475 4647 463 2.069231 9.58053953 Bacteria 2 Bacteria Bacteria 45.4 0.0192   NR PLY05436.1 892 g4549 i0 44.7 1.21814254859611 47 26 30.5 0 356 216 33 79 PLY05436.1 MAG: NAD(P)H-dependent oxidoreductase [Desulfuromonas sp.] diamond 564 45.8 0.991266375545852 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
29516875 29516875 PRJNA797475_P_NODE_22390_length_250_cov_0.870056_g22291_i0 PRJNA797475 22390 250 0.870056 2.17514 Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21 1797756 Bacteria Bacteria 163 5.92e-47   NR OGE22838.1 1797756 g22291 i0 96.4 0.996 83 3 99.6 0 249 1 248 330 OGE22838.1 MAG: 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21] diamond 249 163 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21
31412750 31412750 PRJNA797475_P_NODE_27796_length_244_cov_0.900585_g27697_i0 PRJNA797475 27796 244 0.900585 2.1974274 Desulfobacterales bacterium 2044940 Bacteria Bacteria 80.9 9.05e-16   NR MDJ0818684.1 2044940 g27697 i0 52.5 0.983606557377049 80 36 98.4 1 242 3 268 345 MDJ0818684.1 alanine racemase [Desulfobacterales bacterium] diamond 240 80.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32740778 32740778 PRJNA797475_P_NODE_24960_length_247_cov_0.885057_g24861_i0 PRJNA797475 24960 247 0.885057 2.18609079 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 42.7 0.0391   NR MFC1834884.1 2202153 g24861 i0 63.6 0.40080971659919 33 12 40.1 0 99 1 497 529 MFC1834884.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 99 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;